Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4565

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473313 to 477203 12932 mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477682 to 479259 12933 mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479407 to 483783 12934

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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476,867 - -3.0
477,024 - -1.2
477,027 + -0.9
477,031 - -2.3
477,160 - 2.3
477,191 + -2.2
477,203 - -0.7
477,203 - -0.7
477,294 - -0.9
477,335 - -2.3
477,344 + -2.8
477,348 + -3.9
477,448 + -1.4
477,461 - -0.5
477,466 - -0.1
477,482 - 0.6
477,483 - -2.0
477,615 - 0.4
477,621 - -3.0
477,639 + -2.9
477,658 - -3.1
477,788 + -1.0
477,933 - 12933 mRNA_4565 0.16 -1.5
477,965 - 12933 mRNA_4565 0.18 -0.1
478,087 + 12933 mRNA_4565 0.26 0.5
478,202 - 12933 mRNA_4565 0.33 -2.8
478,317 + 12933 mRNA_4565 0.40 -1.7
478,480 - 12933 mRNA_4565 0.51 -3.5
478,528 - 12933 mRNA_4565 0.54 -1.2
478,650 + 12933 mRNA_4565 0.61 -1.4
478,783 + 12933 mRNA_4565 0.70 -1.2
479,111 - 0.2
479,251 - -1.9
479,394 - -0.8
479,984 - 12934 mRNA_4566 0.13 -1.8