Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4563

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466499 to 468748 12930 mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469300 to 472637 12931 mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473313 to 477203 12932

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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468,511 + 12930 mRNA_4562 0.89 -0.9
468,546 - -1.0
468,565 + -2.3
468,592 - -1.6
468,874 - -1.2
469,604 - -0.8
470,580 - 12931 mRNA_4563 0.38 -2.2
470,596 - 12931 mRNA_4563 0.39 -1.0
470,712 - 12931 mRNA_4563 0.42 -0.4
470,721 + 12931 mRNA_4563 0.43 -0.3
472,447 + -0.3
472,696 - -0.4
472,715 + 0.1
472,734 + -1.3
473,019 + -1.6
473,020 - -1.7
473,027 - -1.3
473,035 - -2.2
473,048 + -1.7
473,057 - -0.6
473,149 + 0.3
473,157 + -2.2
473,172 + -2.5
473,174 + -0.4
473,175 - 1.2
473,176 + -3.3
473,176 - -0.6
473,180 - -0.9
473,181 + -1.3
473,187 + -0.4
473,192 - -2.1
473,193 + -0.4
473,196 + -1.3
473,199 + -0.3
473,213 - -0.4
473,241 + -1.2
473,243 - -3.5
473,317 - -0.9
473,346 + -2.2
473,363 - -0.5
473,366 + -2.3
473,376 + -2.7
473,521 + -1.6