Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4558

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4557: 12925 - KOG3318 Predicted membrane protein, at 456635 to 457680 12925 mRNA_4558: 12926 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 457914 to 459915 12926 mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460890 to 462526 12927

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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456,915 + 12925 mRNA_4557 0.27 -2.4
456,918 + 12925 mRNA_4557 0.27 -1.0
457,349 + 12925 mRNA_4557 0.68 1.1
457,364 - 12925 mRNA_4557 0.70 -0.8
457,931 - -0.4
458,010 + -2.1
458,032 - 0.5
458,043 - -1.1
458,195 - 12926 mRNA_4558 0.14 -1.4
458,337 - 12926 mRNA_4558 0.21 -3.2
458,792 + 12926 mRNA_4558 0.44 -2.2
458,870 + 12926 mRNA_4558 0.48 0.3
459,154 + 12926 mRNA_4558 0.62 -1.8
459,481 + 12926 mRNA_4558 0.78 -0.6
459,737 - -0.5
459,764 - -2.4
459,770 + -1.9
459,771 + 1.6
459,809 + 0.1
459,825 - -2.3
459,958 - -2.5
460,125 - -1.6
460,130 - -1.1
460,131 - 0.1
460,135 - -4.3
460,140 - -1.2
460,144 + -1.6
460,169 - -0.3
460,171 + -2.8
460,240 - -0.5
460,243 + -1.3
460,246 - -2.1
460,253 - -2.0
460,254 - -2.6
460,255 - -1.6
460,258 + -3.2
460,264 + -1.9
460,265 - -2.3
460,402 + -1.6
460,421 + -2.6
460,549 - -2.7
460,850 - -1.6
460,870 - -2.7