Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4540

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410744 to 412303 12907 mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412485 to 416287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417161 to 419747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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411,827 + 12907 mRNA_4539 0.69 -0.3
412,174 + -0.3
412,749 + -0.6
414,317 + 12908 mRNA_4540 0.48 -2.0
414,351 - 12908 mRNA_4540 0.49 -0.8
414,789 - 12908 mRNA_4540 0.61 1.5
414,949 + 12908 mRNA_4540 0.65 -1.5
415,108 - 12908 mRNA_4540 0.69 -3.5
415,235 + 12908 mRNA_4540 0.72 -2.2
415,677 - 12908 mRNA_4540 0.84 0.2
415,704 + 12908 mRNA_4540 0.85 -1.2
415,813 - 12908 mRNA_4540 0.88 -1.9
415,826 - 12908 mRNA_4540 0.88 0.1
415,938 + 0.9
416,111 - -2.8
416,246 - -0.7
416,272 - -2.2
416,273 + -2.5
416,284 + -0.6
416,394 - -4.2
416,420 + -1.7
416,428 + -0.8
416,548 - -3.7
416,572 - -0.5
416,733 - -4.4
416,756 - -2.3
416,859 - -0.6
416,868 - -2.8
416,877 + -2.6
416,910 - -0.2
416,914 - -2.5
416,915 + -1.7
416,916 + -1.0