Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4531

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4530: 12898 - K00605 gcvT, AMT aminomethyltransferase, at 393210 to 395082 12898 mRNA_4531: 12899 - K03671 trxA thioredoxin 1, at 395175 to 396195 12899 mRNA_4532: 12900 - K01247 alkA DNA-3-methyladenine glycosylase II, at 396525 to 397973 12900

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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394,722 + 12898 mRNA_4530 0.81 -0.6
394,898 + -1.7
395,059 + -2.6
395,465 - 12899 mRNA_4531 0.28 -2.9
395,500 + 12899 mRNA_4531 0.32 -0.8
395,520 - 12899 mRNA_4531 0.34 -0.7
395,952 + 12899 mRNA_4531 0.76 -3.0
396,307 + -3.3
396,465 - -3.3
396,480 + -1.4
396,492 - -2.4
396,586 + 0.6
396,612 - 0.2
396,654 + -1.7
396,777 + 12900 mRNA_4532 0.17 -1.2
396,879 - 12900 mRNA_4532 0.24 0.1
397,128 - 12900 mRNA_4532 0.42 -0.7