Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4509

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343058 to 345136 12876 mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345259 to 347501 12877 mRNA_4510: 12878 - KOG0627 Heat shock transcription factor, at 348191 to 349956 12878

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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344,266 + 12876 mRNA_4508 0.58 0.2
344,328 - 12876 mRNA_4508 0.61 -1.0
344,631 + 12876 mRNA_4508 0.76 -1.9
344,860 - 12876 mRNA_4508 0.87 -0.9
344,893 + 12876 mRNA_4508 0.88 -2.5
345,017 - -1.3
345,027 - 0.4
345,154 - -0.8
345,166 - -1.0
345,169 + -2.6
345,192 - -2.0
345,196 - -4.0
345,208 - -2.0
345,496 - 12877 mRNA_4509 0.11 -3.2
346,360 - 12877 mRNA_4509 0.49 -0.1
346,470 - 12877 mRNA_4509 0.54 -0.1
347,377 - -0.8
347,686 - -2.9
347,813 - -1.4
347,976 - -0.4
348,130 - -1.9
348,312 - 0.0
348,418 + 12878 mRNA_4510 0.13 -1.6