Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4508

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4507: 12875 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 341056 to 342749 12875 mRNA_4508: 12876 - KOG2263 Methionine synthase II (cobalamin-independent), at 343058 to 345136 12876 mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345259 to 347501 12877

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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342,351 - 12875 mRNA_4507 0.76 -1.1
342,360 - 12875 mRNA_4507 0.77 -2.2
342,816 + -1.7
342,834 + -0.6
342,864 + -0.1
342,897 + -1.0
342,922 - -0.6
343,154 - -1.0
343,315 - 12876 mRNA_4508 0.12 0.0
343,593 + 12876 mRNA_4508 0.26 -1.8
343,594 - 12876 mRNA_4508 0.26 -1.0
343,745 + 12876 mRNA_4508 0.33 -3.5
343,858 - 12876 mRNA_4508 0.38 -2.8
344,101 - 12876 mRNA_4508 0.50 -2.1
344,162 - 12876 mRNA_4508 0.53 -1.6
344,266 + 12876 mRNA_4508 0.58 0.2
344,328 - 12876 mRNA_4508 0.61 -1.0
344,631 + 12876 mRNA_4508 0.76 -1.9
344,860 - 12876 mRNA_4508 0.87 -0.9
344,893 + 12876 mRNA_4508 0.88 -2.5
345,017 - -1.3
345,027 - 0.4
345,154 - -0.8
345,166 - -1.0
345,169 + -2.6
345,192 - -2.0
345,196 - -4.0
345,208 - -2.0
345,496 - 12877 mRNA_4509 0.11 -3.2