Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4499

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4498: 12866 - Hypothetical Protein, at 322589 to 323741 12866 mRNA_4499: 12867 - K01968 E6.4.1.4A 3-methylcrotonyl-CoA carboxylase alpha subunit, at 323884 to 327513 12867 mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327724 to 330564 12868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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323,270 + 12866 mRNA_4498 0.59 0.5
323,316 - 12866 mRNA_4498 0.63 0.9
323,421 + 12866 mRNA_4498 0.72 -3.1
323,656 + -2.5
324,329 - 12867 mRNA_4499 0.12 -1.7
324,333 - 12867 mRNA_4499 0.12 0.1
324,393 - 12867 mRNA_4499 0.14 -2.2
324,557 - 12867 mRNA_4499 0.19 -1.8
324,563 + 12867 mRNA_4499 0.19 -2.3
325,142 + 12867 mRNA_4499 0.35 -1.3
325,544 + 12867 mRNA_4499 0.46 -1.6
325,589 - 12867 mRNA_4499 0.47 -2.5
325,687 - 12867 mRNA_4499 0.50 -0.5
325,838 + 12867 mRNA_4499 0.54 -1.8
326,560 + 12867 mRNA_4499 0.74 -2.0
326,561 - 12867 mRNA_4499 0.74 0.0
327,285 - 0.8
327,422 + -0.3
327,434 - -1.0
327,437 + -0.4
327,447 + -2.5
327,674 + 2.0
327,798 - 0.2
328,363 - 12868 mRNA_4500 0.22 -1.8
328,485 - 12868 mRNA_4500 0.27 -2.6