Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4486

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294056 to 296303 12853 mRNA_4486: 12854 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 296577 to 298255 12854 mRNA_4487: 12855 - K05857 PLCD phosphatidylinositol phospholipase C, delta, at 298975 to 301181 12855

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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295,672 + 12853 mRNA_4485 0.72 -2.9
295,951 - 12853 mRNA_4485 0.84 -1.9
295,984 - 12853 mRNA_4485 0.86 -1.0
296,134 + -2.0
296,231 - -1.0
296,259 - -2.5
296,265 - 0.0
296,268 - -1.3
296,268 + 0.6
296,269 - -3.0
296,283 + -1.7
296,289 + -2.2
296,330 + -0.4
296,336 - -3.1
296,438 + -1.3
296,614 - -1.1
296,850 - 12854 mRNA_4486 0.16 -2.9
296,859 + 12854 mRNA_4486 0.17 -2.6
296,988 + 12854 mRNA_4486 0.24 -1.5
297,188 + 12854 mRNA_4486 0.36 -3.9
297,300 - 12854 mRNA_4486 0.43 0.1
297,304 + 12854 mRNA_4486 0.43 0.5
297,345 - 12854 mRNA_4486 0.46 -1.5
297,899 - 12854 mRNA_4486 0.79 -2.7
298,467 + -1.2
298,488 + -1.6
298,752 - -1.2
298,752 + -2.0
298,755 - -2.6
298,761 - -0.8
298,774 - -0.9
298,791 + -1.2
298,798 - -2.5
298,803 - -1.0
298,811 - -0.3
298,812 + 0.2
298,826 - -2.6
298,921 - -0.9