Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4484

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4483: 12851 - SUPERFAMILY--SSF53098, at 287945 to 289726 12851 mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289880 to 293833 12852 mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294056 to 296303 12853

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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289,635 - -0.5
289,729 - 2.3
289,731 - -1.9
289,749 + 0.4
289,749 + 0.1
290,496 - 12852 mRNA_4484 0.16 0.3
290,556 + 12852 mRNA_4484 0.17 -0.5
290,577 + 12852 mRNA_4484 0.18 -0.8
290,625 - 12852 mRNA_4484 0.19 -0.4
290,747 + 12852 mRNA_4484 0.22 -2.4
290,815 + 12852 mRNA_4484 0.24 -1.1
290,939 + 12852 mRNA_4484 0.27 -0.7
291,077 - 12852 mRNA_4484 0.30 0.3
291,314 - 12852 mRNA_4484 0.36 -1.3
291,745 - 12852 mRNA_4484 0.47 1.4
292,992 + 12852 mRNA_4484 0.79 -4.2
293,000 - 12852 mRNA_4484 0.79 -3.5
293,013 + 12852 mRNA_4484 0.79 -3.7
293,091 - 12852 mRNA_4484 0.81 -1.3
293,557 + -1.2
293,584 + -1.9
293,627 + -1.2
293,743 + -0.6
293,855 - -0.8
293,910 - -2.0
293,911 - -0.7
293,919 - -0.7
293,921 - -4.2
293,926 - -1.0
293,929 + -2.2
293,931 - -0.6
293,934 + -1.3
293,943 - -0.6
293,970 + -0.8
293,975 + 0.9
293,996 + -1.7
294,080 + -1.1
294,084 + -0.1
294,256 - -2.1
294,357 - 12853 mRNA_4485 0.13 -2.6
294,608 - 12853 mRNA_4485 0.25 -2.2
294,658 - 12853 mRNA_4485 0.27 1.6
294,810 - 12853 mRNA_4485 0.34 -1.3