Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4479

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277974 to 281759 12846 mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282366 to 283335 12847 mRNA_4480: 12848 - Hypothetical Protein, at 283832 to 284551 12848

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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281,438 + -1.0
281,474 + -0.2
281,622 + -3.0
282,041 - -3.4
282,043 + -1.3
282,048 + -1.5
282,048 - -1.4
282,049 + 0.8
282,065 - -1.2
282,099 - -1.7
282,108 + 1.1
282,111 - -0.8
282,113 - -3.8
282,115 - 2.8
282,124 - -0.1
282,142 + -2.6
282,144 + -1.7
282,172 + -1.1
282,253 + -2.3
282,351 + -0.9
282,406 - -0.1
282,413 - -0.5
282,839 - 12847 mRNA_4479 0.49 -1.1
283,250 + -1.5
283,553 + -1.0
283,559 - -2.5
283,565 + -3.0
283,567 + -1.7
283,582 - 0.3
283,585 + 0.4
283,694 + -1.9
283,717 - -2.0
283,720 - -0.2
283,739 + 0.1
283,742 - -1.2
283,868 - -0.9
283,871 + -3.3
283,875 + 0.1
284,019 + 12848 mRNA_4480 0.26 -2.7
284,036 - 12848 mRNA_4480 0.28 -2.9
284,060 + 12848 mRNA_4480 0.32 -1.6
284,061 + 12848 mRNA_4480 0.32 -1.8
284,170 + 12848 mRNA_4480 0.47 -3.3
284,181 + 12848 mRNA_4480 0.48 -1.1
284,187 - 12848 mRNA_4480 0.49 -2.3
284,197 + 12848 mRNA_4480 0.51 1.0
284,208 - 12848 mRNA_4480 0.52 -1.0
284,215 - 12848 mRNA_4480 0.53 0.0
284,254 - 12848 mRNA_4480 0.59 -0.9
284,269 + 12848 mRNA_4480 0.61 -1.1
284,291 + 12848 mRNA_4480 0.64 -1.6
284,300 + 12848 mRNA_4480 0.65 -1.1
284,301 + 12848 mRNA_4480 0.65 -3.0
284,320 + 12848 mRNA_4480 0.68 -0.3
284,324 - 12848 mRNA_4480 0.68 -0.4