Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4478

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276130 to 277462 12845 mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277974 to 281759 12846 mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282366 to 283335 12847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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277,455 + -0.8
277,503 - -2.2
277,589 - -0.9
277,621 - 0.2
277,633 - -1.4
277,636 - 0.5
277,643 - -4.3
277,700 + -1.1
277,702 + -0.5
277,702 + -1.9
277,957 - -3.6
278,259 + -2.6
278,836 - 12846 mRNA_4478 0.23 -0.6
278,980 + 12846 mRNA_4478 0.27 -0.5
278,998 + 12846 mRNA_4478 0.27 -3.2
279,134 + 12846 mRNA_4478 0.31 -0.7
279,266 - 12846 mRNA_4478 0.34 -2.7
279,284 - 12846 mRNA_4478 0.35 -1.9
279,526 - 12846 mRNA_4478 0.41 -2.1
279,564 - 12846 mRNA_4478 0.42 -1.3
279,981 + 12846 mRNA_4478 0.53 -1.0
280,149 - 12846 mRNA_4478 0.57 -2.5
280,149 + 12846 mRNA_4478 0.57 -1.3
280,184 - 12846 mRNA_4478 0.58 -1.8
280,457 - 12846 mRNA_4478 0.66 -2.1
280,476 + 12846 mRNA_4478 0.66 -1.0
280,737 + 12846 mRNA_4478 0.73 -1.7
281,212 - 12846 mRNA_4478 0.86 -1.5
281,438 + -1.0
281,474 + -0.2
281,622 + -3.0
282,041 - -3.4
282,043 + -1.3
282,048 + -1.5
282,048 - -1.4
282,049 + 0.8
282,065 - -1.2
282,099 - -1.7
282,108 + 1.1
282,111 - -0.8
282,113 - -3.8
282,115 - 2.8
282,124 - -0.1
282,142 + -2.6
282,144 + -1.7
282,172 + -1.1
282,253 + -2.3
282,351 + -0.9
282,406 - -0.1
282,413 - -0.5