Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4474

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265412 to 268856 12841 mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268995 to 271231 12842 mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271874 to 274192 12843

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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268,960 - -0.9
269,057 + -2.5
269,062 + -0.4
269,122 + 1.2
269,245 + 12842 mRNA_4474 0.11 -0.4
269,318 - 12842 mRNA_4474 0.14 -0.5
269,330 - 12842 mRNA_4474 0.15 -2.7
269,403 + 12842 mRNA_4474 0.18 -0.7
269,417 + 12842 mRNA_4474 0.19 -1.4
269,420 + 12842 mRNA_4474 0.19 -2.2
269,432 + 12842 mRNA_4474 0.20 -1.7
269,554 - 12842 mRNA_4474 0.25 -1.8
269,575 - 12842 mRNA_4474 0.26 -2.0
269,612 + 12842 mRNA_4474 0.28 0.5
269,675 + 12842 mRNA_4474 0.30 -0.8
270,207 + 12842 mRNA_4474 0.54 -2.0
270,324 - 12842 mRNA_4474 0.59 -1.6
270,454 - 12842 mRNA_4474 0.65 0.0
270,692 - 12842 mRNA_4474 0.76 0.5
270,745 - 12842 mRNA_4474 0.78 -1.1
270,863 + 12842 mRNA_4474 0.84 -1.2
270,865 + 12842 mRNA_4474 0.84 -2.6
270,873 + 12842 mRNA_4474 0.84 -4.3
271,092 - -1.5
271,158 + -1.0
271,192 + -3.1
271,316 - 0.4
271,346 + -0.2
271,349 - -1.0
271,364 - -0.5
271,372 + 0.5
271,382 - -1.0
271,407 - -3.7
271,441 + -2.1
271,457 - -1.5
271,473 - -0.7
271,483 + -3.4
271,493 + -1.6
271,514 + -2.5
271,516 + -1.3
271,564 - -0.6
271,569 - -0.6
271,570 + -1.1
271,592 - -3.6
271,598 - -1.3
271,603 - -0.4
271,604 + -2.1
271,618 - 1.2
271,618 - -1.6
271,618 + -3.1
271,624 + -1.2
271,628 + -2.5
271,639 - -3.0
271,755 - -2.2
271,804 + -2.7