Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4460

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4459: 12827 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 234229 to 236969 12827 mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237623 to 238720 12828 mRNA_4461: 12829 - SUPERFAMILY--SSF52047, at 239089 to 240569 12829

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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236,644 - 12827 mRNA_4459 0.88 -2.3
236,646 + 12827 mRNA_4459 0.88 1.0
236,679 - 12827 mRNA_4459 0.89 -2.8
236,682 - 12827 mRNA_4459 0.89 -2.1
236,762 + -0.2
236,797 + -0.7
236,799 + -1.5
236,892 - 2.0
236,929 + -1.3
236,933 - -1.4
236,939 - -2.8
236,971 - -0.4
237,027 - -1.1
237,040 + -0.3
237,114 + -1.4
237,236 - -0.9
237,353 - -2.9
237,394 - -0.3
237,406 + -0.8
237,426 + -1.5
237,562 + -2.5
237,582 + -2.8
237,585 - 2.0
237,629 + -3.3
237,800 + 12828 mRNA_4460 0.16 -1.3
238,005 + 12828 mRNA_4460 0.35 -1.0
238,045 - 12828 mRNA_4460 0.38 -1.5
238,080 + 12828 mRNA_4460 0.42 -1.2
238,316 + 12828 mRNA_4460 0.63 -3.1
238,562 - 12828 mRNA_4460 0.86 -0.9
238,635 - -3.3
238,984 - -2.7
239,005 + 0.8
239,151 + -0.5
239,170 + -1.6
239,436 - 12829 mRNA_4461 0.23 -1.2
239,654 - 12829 mRNA_4461 0.38 2.3