Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4454

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218886 to 222303 12821 mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223173 to 226550 12822 mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226736 to 228552 12823

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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222,187 + -0.8
222,334 + -1.8
222,337 + -1.1
222,337 + -0.6
222,418 + -1.5
222,468 + -2.2
222,487 + -3.8
222,577 - -0.8
222,708 - -0.6
222,726 - -2.5
222,787 - -0.2
223,042 + -1.8
223,051 - -1.2
223,072 + -2.5
223,128 - -2.1
223,168 - -1.5
223,177 + -2.4
223,226 + -0.4
223,312 - -1.1
223,437 + 0.7
223,480 - -1.9
223,494 + -3.8
223,500 + -1.0
223,560 - 12822 mRNA_4454 0.11 -0.5
223,601 - 12822 mRNA_4454 0.13 -2.1
223,872 - 12822 mRNA_4454 0.21 -1.8
223,879 - 12822 mRNA_4454 0.21 -0.0
223,893 - 12822 mRNA_4454 0.21 -3.5
223,929 - 12822 mRNA_4454 0.22 -1.6
223,950 - 12822 mRNA_4454 0.23 -2.3
224,163 - 12822 mRNA_4454 0.29 -1.7
224,214 + 12822 mRNA_4454 0.31 -1.8
224,289 - 12822 mRNA_4454 0.33 -1.3
224,290 + 12822 mRNA_4454 0.33 -0.3
224,295 - 12822 mRNA_4454 0.33 -2.0
224,391 + 12822 mRNA_4454 0.36 -2.4
224,525 + 12822 mRNA_4454 0.40 -0.4
224,582 - 12822 mRNA_4454 0.42 -2.0
224,690 + 12822 mRNA_4454 0.45 -0.1
224,818 + 12822 mRNA_4454 0.49 0.6
224,854 + 12822 mRNA_4454 0.50 -4.3
224,900 + 12822 mRNA_4454 0.51 -0.4
224,903 - 12822 mRNA_4454 0.51 -0.1
225,050 + 12822 mRNA_4454 0.56 -1.5
225,194 - 12822 mRNA_4454 0.60 0.9
225,226 - 12822 mRNA_4454 0.61 -2.9
225,309 - 12822 mRNA_4454 0.63 -0.4
225,312 - 12822 mRNA_4454 0.63 0.3
225,617 - 12822 mRNA_4454 0.72 -2.1
225,905 - 12822 mRNA_4454 0.81 -1.2
225,905 - 12822 mRNA_4454 0.81 -0.6
226,052 - 12822 mRNA_4454 0.85 -2.3
226,363 - -0.8
226,378 - -1.0
226,388 + -1.6
226,388 + -1.5
226,458 + -0.6
226,510 + -1.6
226,539 - -0.7
226,699 - -0.5
226,823 + -2.1
226,837 - -0.6
226,856 - -1.1
226,868 - -0.7
226,972 - 12823 mRNA_4455 0.13 -3.7
227,382 + 12823 mRNA_4455 0.36 -0.7