Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4453

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4452: 12820 - K13955 yogA zinc-binding alcohol dehydrogenase/oxidoreductase, at 217165 to 218716 12820 mRNA_4453: 12821 - KOG3855 Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis, at 218886 to 222303 12821 mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223173 to 226550 12822

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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218,406 + 12820 mRNA_4452 0.80 -1.0
218,420 - 12820 mRNA_4452 0.81 -1.8
218,434 - 12820 mRNA_4452 0.82 -3.8
218,507 + 12820 mRNA_4452 0.86 -1.9
218,759 + -1.6
218,760 - -0.0
218,846 - -1.6
218,904 + -3.4
218,991 + 0.6
219,051 - -3.1
219,197 + -3.3
219,258 - 12821 mRNA_4453 0.11 -3.0
219,332 + 12821 mRNA_4453 0.13 -2.1
219,494 + 12821 mRNA_4453 0.18 -2.7
219,497 - 12821 mRNA_4453 0.18 -0.3
219,630 - 12821 mRNA_4453 0.22 -0.4
219,646 - 12821 mRNA_4453 0.22 -2.7
219,772 + 12821 mRNA_4453 0.26 -3.7
219,950 - 12821 mRNA_4453 0.31 -2.4
220,026 - 12821 mRNA_4453 0.33 -2.1
220,091 + 12821 mRNA_4453 0.35 -2.8
220,164 - 12821 mRNA_4453 0.37 -1.3
220,217 - 12821 mRNA_4453 0.39 -1.6
220,275 + 12821 mRNA_4453 0.41 -1.6
220,336 + 12821 mRNA_4453 0.42 -2.5
220,374 - 12821 mRNA_4453 0.44 -2.6
220,392 + 12821 mRNA_4453 0.44 -1.5
220,448 + 12821 mRNA_4453 0.46 -0.3
220,720 + 12821 mRNA_4453 0.54 -1.4
220,774 - 12821 mRNA_4453 0.55 -2.7
220,824 + 12821 mRNA_4453 0.57 -0.4
220,831 + 12821 mRNA_4453 0.57 -1.5
220,930 + 12821 mRNA_4453 0.60 -1.2
221,020 + 12821 mRNA_4453 0.62 0.3
221,090 + 12821 mRNA_4453 0.64 -2.2
221,125 - 12821 mRNA_4453 0.66 -1.8
221,190 + 12821 mRNA_4453 0.67 -2.0
221,220 + 12821 mRNA_4453 0.68 -0.6
221,255 - 12821 mRNA_4453 0.69 -2.0
221,285 - 12821 mRNA_4453 0.70 1.1
221,294 + 12821 mRNA_4453 0.70 -0.9
221,348 + 12821 mRNA_4453 0.72 -2.6
221,396 - 12821 mRNA_4453 0.73 0.5
221,526 - 12821 mRNA_4453 0.77 -0.1
221,683 - 12821 mRNA_4453 0.82 -0.8
221,833 + 12821 mRNA_4453 0.86 -2.2
221,833 - 12821 mRNA_4453 0.86 -2.9
221,995 - -0.8
222,141 - -1.8
222,158 - -1.2
222,187 + -0.8
222,334 + -1.8
222,337 + -1.1
222,337 + -0.6
222,418 + -1.5
222,468 + -2.2
222,487 + -3.8
222,577 - -0.8
222,708 - -0.6
222,726 - -2.5
222,787 - -0.2
223,042 + -1.8
223,051 - -1.2
223,072 + -2.5
223,128 - -2.1
223,168 - -1.5
223,177 + -2.4
223,226 + -0.4