Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4445

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4444: 12812 - K14327 UPF2, RENT2 regulator of nonsense transcripts 2, at 192808 to 197198 12812 mRNA_4445: 12813 - K16342 PLA2G4, CPLA2 cytosolic phospholipase A2, at 197325 to 199939 12813 mRNA_4446: 12814 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 200196 to 203838 12814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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196,594 + 12812 mRNA_4444 0.86 -0.1
197,134 - -0.1
197,250 - -2.6
197,262 + 0.3
197,283 - -2.5
197,422 - -0.3
197,429 + -0.4
197,441 - -1.1
197,443 - -2.8
197,449 - -1.2
197,592 + 12813 mRNA_4445 0.10 -0.8
197,593 - 12813 mRNA_4445 0.10 -0.1
197,614 - 12813 mRNA_4445 0.11 -1.4
197,614 - 12813 mRNA_4445 0.11 -0.8
197,746 + 12813 mRNA_4445 0.16 -2.4
197,751 - 12813 mRNA_4445 0.16 -2.5
197,757 + 12813 mRNA_4445 0.17 -1.4
198,038 - 12813 mRNA_4445 0.27 0.9
198,232 - 12813 mRNA_4445 0.35 -1.1
198,332 - 12813 mRNA_4445 0.39 -1.1
198,478 - 12813 mRNA_4445 0.44 -2.6
198,493 + 12813 mRNA_4445 0.45 -1.5
198,595 - 12813 mRNA_4445 0.49 -0.6
198,650 - 12813 mRNA_4445 0.51 -2.5
198,789 + 12813 mRNA_4445 0.56 -1.9
198,901 - 12813 mRNA_4445 0.60 -0.1
199,015 - 12813 mRNA_4445 0.65 -1.1
199,127 + 12813 mRNA_4445 0.69 -1.6
199,375 - 12813 mRNA_4445 0.78 -3.2
199,380 - 12813 mRNA_4445 0.79 -0.4
199,632 + 12813 mRNA_4445 0.88 -0.8
200,224 - -0.1
200,296 - -1.3
200,365 + -0.6
200,621 + 12814 mRNA_4446 0.12 -1.4
200,657 + 12814 mRNA_4446 0.13 -2.4
200,675 + 12814 mRNA_4446 0.13 -2.0