Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4441

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183991 to 186593 12808 mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187082 to 188392 12809 mRNA_4442: 12810 - SUPERFAMILY--SSF52047, at 188576 to 190157 12810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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186,705 - -2.1
186,776 - -0.9
186,894 + -1.9
187,167 + -1.6
187,173 + -2.5
187,326 - 12809 mRNA_4441 0.19 -0.8
187,335 + 12809 mRNA_4441 0.19 -1.7
187,745 - 12809 mRNA_4441 0.51 -1.7
187,930 + 12809 mRNA_4441 0.65 -1.0
187,960 + 12809 mRNA_4441 0.67 -0.7
188,045 - 12809 mRNA_4441 0.73 -0.8
188,052 + 12809 mRNA_4441 0.74 -1.9
188,175 - 12809 mRNA_4441 0.83 -2.5
188,176 + 12809 mRNA_4441 0.83 -1.8
188,394 + -2.4
188,490 + 0.3
188,500 - -2.6
188,522 + -0.4
188,641 - -1.0
188,659 + -1.5
188,666 - -1.6
188,669 + -2.4
188,829 + 12810 mRNA_4442 0.16 -0.2
188,920 - 12810 mRNA_4442 0.22 -1.0
188,990 + 12810 mRNA_4442 0.26 -2.8
189,045 - 12810 mRNA_4442 0.30 -2.1
189,051 + 12810 mRNA_4442 0.30 -0.6
189,108 + 12810 mRNA_4442 0.34 -1.7
189,231 + 12810 mRNA_4442 0.41 -3.7
189,264 - 12810 mRNA_4442 0.43 0.6
189,375 + 12810 mRNA_4442 0.51 -1.0
189,382 - 12810 mRNA_4442 0.51 1.1