Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4437

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4436: 12804 - Hypothetical Protein, at 178306 to 178939 12804 mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179176 to 181994 12805 mRNA_4438: 12806 - Hypothetical Protein, at 182518 to 183149 12806

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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178,180 - -3.5
178,275 + -0.2
178,278 - -1.5
178,309 - 0.6
178,315 - -2.3
178,320 - -2.8
178,320 - 1.1
178,322 + -0.0
178,324 + -1.0
178,335 + -2.1
178,341 + -1.1
178,347 + -0.4
178,358 - -0.5
178,381 - 12804 mRNA_4436 0.12 -3.3
178,385 - 12804 mRNA_4436 0.12 0.9
178,488 + 12804 mRNA_4436 0.29 0.8
178,622 - 12804 mRNA_4436 0.50 -2.1
178,627 + 12804 mRNA_4436 0.51 -1.0
178,736 + 12804 mRNA_4436 0.68 -1.5
178,820 + 12804 mRNA_4436 0.81 -0.1
178,867 + 12804 mRNA_4436 0.88 -3.2
178,884 + -0.1
178,885 - -1.6
178,939 - -2.6
179,029 - -0.1
179,032 - -2.5
179,033 + -2.6
179,039 + 0.7
179,039 + -3.1
179,078 - -2.5
179,226 - -1.6
179,233 + -3.1
179,255 + 1.2
179,707 - 12805 mRNA_4437 0.19 -2.9
179,793 + 12805 mRNA_4437 0.22 -2.2
179,910 + 12805 mRNA_4437 0.26 -2.2
179,959 + 12805 mRNA_4437 0.28 -0.5
179,988 - 12805 mRNA_4437 0.29 -1.7
180,064 + 12805 mRNA_4437 0.32 -0.9
180,107 + 12805 mRNA_4437 0.33 -1.1
180,210 - 12805 mRNA_4437 0.37 0.4
180,480 - 12805 mRNA_4437 0.46 -2.0
180,542 - 12805 mRNA_4437 0.48 0.2
180,553 - 12805 mRNA_4437 0.49 -2.9
180,673 - 12805 mRNA_4437 0.53 -1.5
180,922 - 12805 mRNA_4437 0.62 -1.8
181,265 + 12805 mRNA_4437 0.74 -2.6
181,306 - 12805 mRNA_4437 0.76 -2.7
181,412 + 12805 mRNA_4437 0.79 0.5
181,660 - 12805 mRNA_4437 0.88 -3.5
182,260 + -3.4
182,277 + -1.6
182,427 - -1.2
182,439 - -0.0
182,459 + -1.4
182,492 + -2.8
182,519 + -0.8
182,534 + -0.5
182,594 + 12806 mRNA_4438 0.12 -0.8
182,610 + 12806 mRNA_4438 0.15 -2.2
182,754 + 12806 mRNA_4438 0.37 -1.3
182,770 - 12806 mRNA_4438 0.40 0.7
182,892 + 12806 mRNA_4438 0.59 -3.1