Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4428

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160068 to 161346 12795 mRNA_4428: 12796 - Hypothetical Protein, at 161727 to 164031 12796 mRNA_4429: 12797 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 164549 to 166627 12797

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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160,858 - 12795 mRNA_4427 0.62 -0.1
160,875 - 12795 mRNA_4427 0.63 -0.9
161,025 + 12795 mRNA_4427 0.75 -1.9
161,139 - 12795 mRNA_4427 0.84 -0.2
161,146 + 12795 mRNA_4427 0.84 -0.1
161,177 - 12795 mRNA_4427 0.87 -3.4
161,348 - -2.2
161,395 - -0.4
161,396 + -2.3
161,753 - -2.5
162,447 - 12796 mRNA_4428 0.31 -0.4
162,501 + 12796 mRNA_4428 0.34 -1.5
162,509 - 12796 mRNA_4428 0.34 -1.8
162,556 + 12796 mRNA_4428 0.36 0.4
162,691 - 12796 mRNA_4428 0.42 -1.3
162,702 + 12796 mRNA_4428 0.42 0.9
162,804 - 12796 mRNA_4428 0.47 -0.6
162,820 + 12796 mRNA_4428 0.47 -0.7
163,243 - 12796 mRNA_4428 0.66 -0.5
163,354 - 12796 mRNA_4428 0.71 -3.4
163,355 - 12796 mRNA_4428 0.71 -2.6
163,567 - 12796 mRNA_4428 0.80 -1.8
163,705 - 12796 mRNA_4428 0.86 -1.6
163,858 + -1.7
163,941 - -3.1
164,189 - -3.2
164,190 + -2.4
164,367 - -2.3
164,375 + -0.6
164,375 + 0.5
164,422 - -1.5
164,650 + -0.6
164,670 + -0.5
164,881 + 12797 mRNA_4429 0.16 -2.3
164,962 - 12797 mRNA_4429 0.20 -1.6