Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4419

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4418: 12786 - KOG3683 Uncharacterized conserved protein, at 138075 to 139542 12786 mRNA_4419: 12787 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 139865 to 142182 12787 mRNA_4420: 12788 - Hypothetical Protein, at 142782 to 144296 12788

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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139,579 - 0.2
139,611 + 0.3
139,626 + -2.0
139,751 + -3.0
139,756 + -3.1
139,795 + 0.2
139,896 - -0.9
139,897 - -3.8
139,935 - -3.1
140,060 - -1.7
140,102 + 12787 mRNA_4419 0.10 -2.3
140,110 - 12787 mRNA_4419 0.11 0.7
140,355 + 12787 mRNA_4419 0.21 -3.5
140,509 - 12787 mRNA_4419 0.28 -1.0
142,307 + -0.4
142,356 - -1.3
142,405 - 0.9
142,412 + -2.4
142,487 + -0.4
142,562 + -0.6
142,622 + -1.9
142,628 - -2.1
142,727 - -0.9
143,182 + 12788 mRNA_4420 0.26 -1.1
143,182 + 12788 mRNA_4420 0.26 -1.5