Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4418

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4417: 12785 - Hypothetical Protein, at 136437 to 137903 12785 mRNA_4418: 12786 - KOG3683 Uncharacterized conserved protein, at 138075 to 139542 12786 mRNA_4419: 12787 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 139865 to 142182 12787

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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137,161 + 12785 mRNA_4417 0.49 -2.4
137,185 + 12785 mRNA_4417 0.51 -0.9
137,188 - 12785 mRNA_4417 0.51 -0.3
137,191 + 12785 mRNA_4417 0.51 -2.3
137,312 + 12785 mRNA_4417 0.60 -1.8
137,420 + 12785 mRNA_4417 0.67 0.1
137,610 + 12785 mRNA_4417 0.80 -2.9
137,697 - 12785 mRNA_4417 0.86 0.7
138,161 + -1.4
138,304 + 12786 mRNA_4418 0.16 -3.5
138,318 + 12786 mRNA_4418 0.17 -1.4
138,573 + 12786 mRNA_4418 0.34 -2.0
138,733 + 12786 mRNA_4418 0.45 -4.9
138,774 + 12786 mRNA_4418 0.48 -0.2
138,821 - 12786 mRNA_4418 0.51 -1.1
138,825 + 12786 mRNA_4418 0.51 -2.2
139,579 - 0.2
139,611 + 0.3
139,626 + -2.0
139,751 + -3.0
139,756 + -3.1
139,795 + 0.2
139,896 - -0.9
139,897 - -3.8
139,935 - -3.1
140,060 - -1.7
140,102 + 12787 mRNA_4419 0.10 -2.3
140,110 - 12787 mRNA_4419 0.11 0.7
140,355 + 12787 mRNA_4419 0.21 -3.5
140,509 - 12787 mRNA_4419 0.28 -1.0