Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4417

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4416: 12784 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 134508 to 136011 12784 mRNA_4417: 12785 - Hypothetical Protein, at 136437 to 137903 12785 mRNA_4418: 12786 - KOG3683 Uncharacterized conserved protein, at 138075 to 139542 12786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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135,456 + 12784 mRNA_4416 0.63 -0.8
135,457 - 12784 mRNA_4416 0.63 -3.4
135,465 + 12784 mRNA_4416 0.64 -0.3
135,488 - 12784 mRNA_4416 0.65 -2.2
135,499 - 12784 mRNA_4416 0.66 -1.6
135,587 + 12784 mRNA_4416 0.72 -1.9
135,603 - 12784 mRNA_4416 0.73 -1.9
135,669 + 12784 mRNA_4416 0.77 0.1
135,776 - 12784 mRNA_4416 0.84 -1.5
135,847 - 12784 mRNA_4416 0.89 -0.9
135,903 + -0.8
135,966 + -0.9
136,058 + -2.0
136,176 - -0.6
136,183 - -2.5
136,207 - -1.6
136,207 + -3.2
136,233 + -1.8
136,253 + -2.2
136,394 - -2.4
136,528 + -3.3
136,546 - -2.1
136,694 + 12785 mRNA_4417 0.18 -2.1
136,779 + 12785 mRNA_4417 0.23 -2.5
136,782 - 12785 mRNA_4417 0.24 -3.2
136,782 + 12785 mRNA_4417 0.24 -3.1
136,850 + 12785 mRNA_4417 0.28 0.5
137,161 + 12785 mRNA_4417 0.49 -2.4
137,185 + 12785 mRNA_4417 0.51 -0.9
137,188 - 12785 mRNA_4417 0.51 -0.3
137,191 + 12785 mRNA_4417 0.51 -2.3
137,312 + 12785 mRNA_4417 0.60 -1.8
137,420 + 12785 mRNA_4417 0.67 0.1
137,610 + 12785 mRNA_4417 0.80 -2.9
137,697 - 12785 mRNA_4417 0.86 0.7
138,161 + -1.4
138,304 + 12786 mRNA_4418 0.16 -3.5
138,318 + 12786 mRNA_4418 0.17 -1.4
138,573 + 12786 mRNA_4418 0.34 -2.0
138,733 + 12786 mRNA_4418 0.45 -4.9
138,774 + 12786 mRNA_4418 0.48 -0.2
138,821 - 12786 mRNA_4418 0.51 -1.1
138,825 + 12786 mRNA_4418 0.51 -2.2