Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4416

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131419 to 134157 12783 mRNA_4416: 12784 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 134508 to 136011 12784 mRNA_4417: 12785 - Hypothetical Protein, at 136437 to 137903 12785

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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133,511 + 12783 mRNA_4415 0.76 -1.5
133,552 + 12783 mRNA_4415 0.78 -1.2
133,620 - 12783 mRNA_4415 0.80 -2.6
133,671 + 12783 mRNA_4415 0.82 -2.9
133,700 + 12783 mRNA_4415 0.83 -1.4
133,701 + 12783 mRNA_4415 0.83 -1.2
133,707 - 12783 mRNA_4415 0.84 -1.4
134,039 + -1.3
134,560 + -1.3
134,596 + -0.6
134,625 - -0.6
134,728 + 12784 mRNA_4416 0.15 -1.4
134,875 + 12784 mRNA_4416 0.24 -3.9
135,073 - 12784 mRNA_4416 0.38 -0.1
135,143 + 12784 mRNA_4416 0.42 -2.2
135,149 + 12784 mRNA_4416 0.43 0.2
135,213 + 12784 mRNA_4416 0.47 -1.3
135,255 - 12784 mRNA_4416 0.50 -0.8
135,336 - 12784 mRNA_4416 0.55 -1.5
135,341 - 12784 mRNA_4416 0.55 -3.3
135,351 - 12784 mRNA_4416 0.56 -1.4
135,419 - 12784 mRNA_4416 0.61 0.0
135,427 + 12784 mRNA_4416 0.61 -1.8
135,456 + 12784 mRNA_4416 0.63 -0.8
135,457 - 12784 mRNA_4416 0.63 -3.4
135,465 + 12784 mRNA_4416 0.64 -0.3
135,488 - 12784 mRNA_4416 0.65 -2.2
135,499 - 12784 mRNA_4416 0.66 -1.6
135,587 + 12784 mRNA_4416 0.72 -1.9
135,603 - 12784 mRNA_4416 0.73 -1.9
135,669 + 12784 mRNA_4416 0.77 0.1
135,776 - 12784 mRNA_4416 0.84 -1.5
135,847 - 12784 mRNA_4416 0.89 -0.9
135,903 + -0.8
135,966 + -0.9
136,058 + -2.0
136,176 - -0.6
136,183 - -2.5
136,207 - -1.6
136,207 + -3.2
136,233 + -1.8
136,253 + -2.2
136,394 - -2.4
136,528 + -3.3
136,546 - -2.1
136,694 + 12785 mRNA_4417 0.18 -2.1
136,779 + 12785 mRNA_4417 0.23 -2.5
136,782 - 12785 mRNA_4417 0.24 -3.2
136,782 + 12785 mRNA_4417 0.24 -3.1
136,850 + 12785 mRNA_4417 0.28 0.5