Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4414

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126520 to 129077 12781 mRNA_4414: 12782 - BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [..., at 129803 to 130566 12782 mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131419 to 134157 12783

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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128,873 - -0.5
128,874 - -1.6
129,023 + -2.1
129,214 + -1.9
129,248 + -1.5
129,251 - -1.6
129,425 - -3.0
129,474 + 0.9
129,484 - 1.2
129,484 - -1.9
129,486 - -1.6
129,495 - -0.9
129,502 - -0.5
129,503 + -0.3
129,514 + 0.3
129,521 + -0.6
129,597 + -1.4
129,614 - -2.7
129,624 + -0.8
129,745 + -2.4
129,751 - -0.8
129,771 - -1.2
129,824 - -3.8
129,889 + 12782 mRNA_4414 0.11 -2.4
130,057 + 12782 mRNA_4414 0.33 -1.2
130,161 + 12782 mRNA_4414 0.47 -0.0
130,176 + 12782 mRNA_4414 0.49 -1.9
130,196 - 12782 mRNA_4414 0.51 -2.1
130,324 + 12782 mRNA_4414 0.68 -2.3
130,452 + 12782 mRNA_4414 0.85 -2.4
130,541 + 0.5
130,622 + -1.2
130,786 - -1.0
131,085 - 0.3
131,087 - -1.6
131,213 - -1.1
131,256 - -1.5
131,478 - -3.8
131,478 + -1.1
131,546 + -4.0