Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4410

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113128 to 114818 12777 mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115129 to 117248 12778 mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117633 to 120365 12779

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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114,379 - 12777 mRNA_4409 0.74 -1.6
114,510 + 12777 mRNA_4409 0.82 1.8
114,691 + -1.2
114,708 - 0.2
114,871 + -1.4
114,873 + -1.6
115,005 + -0.5
115,556 + 12778 mRNA_4410 0.20 -1.1
115,565 + 12778 mRNA_4410 0.21 -0.4
115,830 - 12778 mRNA_4410 0.33 0.3
115,834 + 12778 mRNA_4410 0.33 0.5
115,863 - 12778 mRNA_4410 0.35 -2.0
115,943 - 12778 mRNA_4410 0.38 -2.9
115,950 + 12778 mRNA_4410 0.39 -2.1
116,444 - 12778 mRNA_4410 0.62 -1.3
116,531 - 12778 mRNA_4410 0.66 -1.3
116,801 - 12778 mRNA_4410 0.79 -0.7
116,861 - 12778 mRNA_4410 0.82 0.1
116,895 + 12778 mRNA_4410 0.83 -3.6
117,134 + -0.9
117,145 + -0.2
117,165 + 1.7
117,475 + -1.8
117,484 - -1.0
117,603 - -0.5