Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4407

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4406: 12774 - KOG2100 Dipeptidyl aminopeptidase, at 106855 to 109155 12774 mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109306 to 110822 12775 mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111207 to 112706 12776

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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108,625 + 12774 mRNA_4406 0.77 -0.2
108,710 - 12774 mRNA_4406 0.81 0.3
108,723 + 12774 mRNA_4406 0.81 -0.9
108,846 - 12774 mRNA_4406 0.87 -2.2
108,915 + 12774 mRNA_4406 0.90 -2.3
108,927 + -1.7
108,932 - -0.7
108,938 - -2.5
108,981 - -1.1
109,076 - -2.7
109,077 - 2.3
109,211 - -1.6
109,228 - -1.7
109,246 - -0.6
109,251 + -3.3
109,252 + -0.3
109,252 + -3.2
109,254 - -0.1
109,266 + -3.8
109,278 + -2.5
109,332 + -2.6
109,347 - -2.2
109,361 - 0.6
109,375 + -0.2
109,501 - 12775 mRNA_4407 0.13 1.1
109,553 - 12775 mRNA_4407 0.16 -1.8
109,593 + 12775 mRNA_4407 0.19 -1.7
109,604 - 12775 mRNA_4407 0.20 -2.1
109,647 - 12775 mRNA_4407 0.22 -2.5
109,779 - 12775 mRNA_4407 0.31 -2.4
109,803 + 12775 mRNA_4407 0.33 -0.1
109,891 - 12775 mRNA_4407 0.39 -0.9
110,055 - 12775 mRNA_4407 0.49 -1.9
110,083 - 12775 mRNA_4407 0.51 -0.9
110,390 - 12775 mRNA_4407 0.71 -1.7
110,534 + 12775 mRNA_4407 0.81 -1.0
110,566 + 12775 mRNA_4407 0.83 -2.9
110,571 - 12775 mRNA_4407 0.83 -1.8
110,986 + -3.8
110,993 - -2.7
111,649 - 12776 mRNA_4408 0.29 -1.3
111,713 - 12776 mRNA_4408 0.34 -1.5