Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4405

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4404: 12772 - HMMPfam-Fatty acid hydroxylase superfamily-PF04116, at 103053 to 104397 12772 mRNA_4405: 12773 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 105098 to 106781 12773 mRNA_4406: 12774 - KOG2100 Dipeptidyl aminopeptidase, at 106855 to 109155 12774

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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104,186 - 12772 mRNA_4404 0.84 -1.6
104,467 + 0.1
104,484 - -0.8
104,505 - -0.4
104,524 + -1.1
104,529 - -0.3
104,536 - -2.0
104,639 - -1.4
104,641 - -0.1
104,641 - -0.4
104,661 - -1.8
104,662 - -1.7
104,756 - -1.2
104,937 - -0.8
104,978 + -1.8
105,098 - -0.9
105,112 + -2.5
105,295 + 12773 mRNA_4405 0.12 -1.5
105,395 - 12773 mRNA_4405 0.18 -1.5
105,528 + 12773 mRNA_4405 0.26 -0.0
105,533 - 12773 mRNA_4405 0.26 -2.3
105,559 + 12773 mRNA_4405 0.27 -0.8
106,274 - 12773 mRNA_4405 0.70 -3.1
106,391 + 12773 mRNA_4405 0.77 -1.6
106,440 + 12773 mRNA_4405 0.80 1.2
106,606 + 12773 mRNA_4405 0.90 -0.9
106,843 - -0.5
107,151 + 12774 mRNA_4406 0.13 -3.6
107,279 - 12774 mRNA_4406 0.18 -1.8
107,298 - 12774 mRNA_4406 0.19 -2.0
107,298 + 12774 mRNA_4406 0.19 -0.6
107,422 + 12774 mRNA_4406 0.25 -2.4
107,487 - 12774 mRNA_4406 0.27 -1.0
107,531 + 12774 mRNA_4406 0.29 -1.3
107,762 - 12774 mRNA_4406 0.39 -0.8