Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4393

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80185 to 81389 12760 mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82282 to 84844 12761 mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85046 to 87560 12762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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81,342 - -0.1
81,354 - -1.4
81,367 + -2.5
81,483 + -3.8
81,504 + -0.1
81,516 + -2.5
81,524 + -3.6
81,542 - -0.2
81,646 - 2.7
81,650 - -2.1
81,655 + -2.0
81,658 - -0.5
81,661 + -2.7
81,674 - -1.5
81,699 - -1.7
81,701 - -1.1
81,701 - 0.5
81,706 + -0.6
81,709 - -0.3
81,709 - -1.1
81,710 + -4.2
81,710 + -1.8
81,716 + -2.2
81,716 + -1.5
81,727 - -1.1
81,741 + -1.8
81,759 + -0.3
81,760 - -1.3
81,760 - -0.3
81,761 - -2.4
81,762 - -0.9
81,769 - -1.0
81,773 - -0.9
81,778 - 0.0
81,784 + -1.2
81,795 - -1.9
81,849 + -0.8
81,869 + -3.2
81,886 - -0.3
81,896 - -2.1
81,898 + -1.4
81,900 - -2.0
81,911 - -0.9
81,913 - -2.3
81,924 + -2.6
81,929 + 0.0
82,077 + -1.3
82,079 + -0.3
82,079 + 0.2
82,087 + -0.7
82,096 + -2.8
82,236 - -1.1
82,243 - -0.1
82,380 - -1.5
82,401 + -2.3
82,518 - -3.0
82,523 + -3.3
82,525 - -3.2
82,535 + -2.9
82,537 + -1.4
82,685 + 12761 mRNA_4393 0.16 -1.0
82,840 + 12761 mRNA_4393 0.22 -0.6
82,982 + 12761 mRNA_4393 0.27 -1.6
83,288 - 12761 mRNA_4393 0.39 -1.8
83,587 - 12761 mRNA_4393 0.51 -0.9
83,730 + 12761 mRNA_4393 0.56 -0.5
83,786 - 12761 mRNA_4393 0.59 -2.4
84,272 - 12761 mRNA_4393 0.78 -1.0
84,523 + 12761 mRNA_4393 0.87 -1.5
84,662 + -1.6
84,830 - -1.9
84,946 - -1.1