Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4387

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70020 to 71335 12754 mRNA_4387: 12755 - HMMPfam-Ctf8-PF09696, at 71691 to 72315 12755 mRNA_4388: 12756 - KOG2084 Predicted histone tail methylase containing SET domain, at 72775 to 74031 12756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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70,720 - 12754 mRNA_4386 0.53 0.4
70,863 - 12754 mRNA_4386 0.64 -1.9
70,864 - 12754 mRNA_4386 0.64 -0.5
70,894 + 12754 mRNA_4386 0.66 -2.0
70,932 + 12754 mRNA_4386 0.69 0.4
70,978 - 12754 mRNA_4386 0.73 -2.0
71,435 + -1.8
71,446 + -2.0
71,452 + -1.7
71,462 + -2.7
71,464 + 0.4
71,532 - -3.2
71,612 + -0.9
71,774 + 12755 mRNA_4387 0.13 -0.3
72,184 + 12755 mRNA_4387 0.79 0.2
72,219 + 12755 mRNA_4387 0.84 1.1
72,832 - -3.4
73,016 - 12756 mRNA_4388 0.19 -1.4
73,056 - 12756 mRNA_4388 0.22 1.1