Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4386

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68273 to 69417 12753 mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70020 to 71335 12754 mRNA_4387: 12755 - HMMPfam-Ctf8-PF09696, at 71691 to 72315 12755

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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69,022 - 12753 mRNA_4385 0.65 0.7
69,030 + 12753 mRNA_4385 0.66 -3.0
69,331 - -0.8
69,361 + 1.3
69,372 - -1.0
69,431 - -0.6
69,483 + -2.9
69,513 - -3.2
69,526 - -1.8
69,563 + -3.0
69,621 + -0.5
69,710 + -1.4
70,023 + -0.3
70,612 + 12754 mRNA_4386 0.45 -2.8
70,720 - 12754 mRNA_4386 0.53 0.4
70,863 - 12754 mRNA_4386 0.64 -1.9
70,864 - 12754 mRNA_4386 0.64 -0.5
70,894 + 12754 mRNA_4386 0.66 -2.0
70,932 + 12754 mRNA_4386 0.69 0.4
70,978 - 12754 mRNA_4386 0.73 -2.0
71,435 + -1.8
71,446 + -2.0
71,452 + -1.7
71,462 + -2.7
71,464 + 0.4
71,532 - -3.2
71,612 + -0.9
71,774 + 12755 mRNA_4387 0.13 -0.3
72,184 + 12755 mRNA_4387 0.79 0.2
72,219 + 12755 mRNA_4387 0.84 1.1