Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4380

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4379: 12747 - KOG4359 Protein kinase C inhibitor-like protein, at 56702 to 58135 12747 mRNA_4380: 12748 - K00550 OPI3 methylene-fatty-acyl-phospholipid synthase, at 58451 to 59547 12748 mRNA_4381: 12749 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 59708 to 61504 12749

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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57,550 + 12747 mRNA_4379 0.59 -2.4
57,562 - 12747 mRNA_4379 0.60 -1.4
57,568 - 12747 mRNA_4379 0.60 -0.7
57,714 - 12747 mRNA_4379 0.71 -0.6
57,787 - 12747 mRNA_4379 0.76 -1.4
57,790 + 12747 mRNA_4379 0.76 -0.3
57,822 + 12747 mRNA_4379 0.78 -3.3
57,937 - 12747 mRNA_4379 0.86 1.0
57,947 + 12747 mRNA_4379 0.87 -1.5
57,966 + 12747 mRNA_4379 0.88 -1.9
58,084 - -2.0
58,130 + -1.0
58,201 + -2.2
58,284 - -1.2
58,368 - -0.1
58,391 - -1.8
58,400 - -0.7
58,400 - -1.1
58,401 + -1.7
58,403 + 0.1
58,405 - -0.3
58,424 - -2.6
58,424 - 0.3
58,448 - -0.6
58,448 - -3.2
58,449 + -3.0
58,449 + -0.8
58,449 + -1.9
58,467 + -3.5
58,512 + -2.0
58,530 + -2.1
58,539 - 1.7
58,589 + 12748 mRNA_4380 0.13 -0.3
58,589 - 12748 mRNA_4380 0.13 -2.8
58,602 - 12748 mRNA_4380 0.14 -0.7
58,698 - 12748 mRNA_4380 0.23 -2.2
58,710 - 12748 mRNA_4380 0.24 -1.5
58,716 + 12748 mRNA_4380 0.24 -1.0
58,985 + 12748 mRNA_4380 0.49 -0.8
59,174 + 12748 mRNA_4380 0.66 -4.8
59,174 + 12748 mRNA_4380 0.66 -0.3
59,177 - 12748 mRNA_4380 0.66 -1.2
59,283 - 12748 mRNA_4380 0.76 -1.1
59,431 - 12748 mRNA_4380 0.89 -0.1
59,446 + -2.8
59,723 + -1.9
59,913 + 12749 mRNA_4381 0.11 -1.5
60,110 - 12749 mRNA_4381 0.22 -3.7
60,328 + 12749 mRNA_4381 0.35 -1.5
60,450 - 12749 mRNA_4381 0.41 -1.6