Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4375

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743 mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49826 to 51100 12744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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45,445 + 12742 mRNA_4374 0.80 -1.3
45,452 - 12742 mRNA_4374 0.80 0.0
45,462 + 12742 mRNA_4374 0.80 -0.2
45,471 - 12742 mRNA_4374 0.81 0.4
45,741 - 12742 mRNA_4374 0.90 -2.9
45,744 - -2.2
45,744 + -2.8
45,773 + -1.7
45,906 + 0.6
45,912 - -0.6
45,918 - -1.1
45,996 - -1.0
46,018 + -1.4
46,034 - -1.1
46,055 - -1.9
46,059 + -2.0
46,060 + -2.1
46,074 + -2.3
46,155 - 1.5
46,186 + 1.6
46,189 - -0.9
46,191 + -1.9
46,192 + -1.6
46,195 - -1.0
46,201 + -1.8
46,202 + -0.3
46,203 - -2.9
46,205 + -1.7
46,208 - -1.2
46,208 - -0.6
46,217 + -1.0
46,217 + -0.7
46,219 - 0.0
46,227 - -0.3
46,230 + -1.1
46,233 + -1.1
46,235 + 1.1
46,237 - -1.2
46,237 + -0.4
46,287 + -1.5
46,334 + -1.6
46,342 - -1.8
46,346 + -1.4
46,355 + -0.3
46,355 - -0.8
46,367 + -1.8
46,367 + -0.3
46,367 - 0.2
46,368 - -1.1
46,369 - -1.4
46,383 - -0.9
46,384 + -1.2
46,387 + -0.8
46,623 - -0.8
46,759 + 12743 mRNA_4375 0.13 -1.3
46,940 - 12743 mRNA_4375 0.19 -3.1
46,947 - 12743 mRNA_4375 0.20 -0.8
46,956 + 12743 mRNA_4375 0.20 -0.8
46,976 + 12743 mRNA_4375 0.21 -3.1
47,119 + 12743 mRNA_4375 0.25 -2.7
47,155 - 12743 mRNA_4375 0.26 -4.2
47,579 + 12743 mRNA_4375 0.40 -2.1
47,664 + 12743 mRNA_4375 0.43 -2.7
47,758 + 12743 mRNA_4375 0.46 -3.3
47,837 - 12743 mRNA_4375 0.49 0.2
47,956 + 12743 mRNA_4375 0.53 -1.9
48,013 + 12743 mRNA_4375 0.55 -1.1
48,024 - 12743 mRNA_4375 0.55 -2.6
48,445 + 12743 mRNA_4375 0.69 -0.7
48,715 - 12743 mRNA_4375 0.78 -0.7
48,716 - 12743 mRNA_4375 0.78 -1.4
48,905 + 12743 mRNA_4375 0.84 -2.3
49,014 + 12743 mRNA_4375 0.87 -1.3
49,028 - 12743 mRNA_4375 0.88 -2.3
49,176 + -0.7
49,334 - -2.0
49,348 + -0.3
49,351 - -2.0
49,397 - 0.4
49,415 - -3.1
49,433 - 0.5
49,446 - 0.4
49,628 - -2.4
49,747 - -0.6
49,901 + -1.3
50,136 + 12744 mRNA_4376 0.24 -3.8
50,139 - 12744 mRNA_4376 0.25 -1.5