Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4374

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41270 to 42990 12741 mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46350 to 49394 12743

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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42,232 + 12741 mRNA_4373 0.56 -0.2
42,540 + 12741 mRNA_4373 0.74 -3.0
42,735 + 12741 mRNA_4373 0.85 -0.8
42,790 + 12741 mRNA_4373 0.88 -3.7
42,864 + -1.6
42,973 + -2.5
43,033 + -1.4
43,033 + -1.9
43,160 + -0.3
43,162 - -2.0
43,311 + -3.7
43,322 - -3.1
43,373 - 0.3
43,382 + -2.3
43,425 + 12742 mRNA_4374 0.10 -1.0
43,437 + 12742 mRNA_4374 0.11 -2.1
43,541 - 12742 mRNA_4374 0.14 -0.6
43,542 - 12742 mRNA_4374 0.14 -1.2
43,720 + 12742 mRNA_4374 0.20 -0.5
43,871 + 12742 mRNA_4374 0.25 -3.2
43,896 - 12742 mRNA_4374 0.26 0.2
43,905 - 12742 mRNA_4374 0.27 -1.2
43,943 - 12742 mRNA_4374 0.28 -1.2
44,151 + 12742 mRNA_4374 0.35 -0.8
44,207 - 12742 mRNA_4374 0.37 -1.9
44,277 + 12742 mRNA_4374 0.39 -3.2
44,319 - 12742 mRNA_4374 0.41 -1.8
44,401 - 12742 mRNA_4374 0.44 -2.2
44,402 + 12742 mRNA_4374 0.44 -3.0
44,727 - 12742 mRNA_4374 0.55 -0.7
44,761 - 12742 mRNA_4374 0.56 -1.3
44,763 - 12742 mRNA_4374 0.56 -1.5
44,781 - 12742 mRNA_4374 0.57 -0.3
44,838 - 12742 mRNA_4374 0.59 -1.3
44,847 - 12742 mRNA_4374 0.59 -2.8
44,873 - 12742 mRNA_4374 0.60 -1.2
44,883 - 12742 mRNA_4374 0.60 -4.6
44,895 + 12742 mRNA_4374 0.61 -1.3
44,910 + 12742 mRNA_4374 0.61 -1.7
45,168 - 12742 mRNA_4374 0.70 1.5
45,173 - 12742 mRNA_4374 0.70 -0.4
45,189 + 12742 mRNA_4374 0.71 0.5
45,445 + 12742 mRNA_4374 0.80 -1.3
45,452 - 12742 mRNA_4374 0.80 0.0
45,462 + 12742 mRNA_4374 0.80 -0.2
45,471 - 12742 mRNA_4374 0.81 0.4
45,741 - 12742 mRNA_4374 0.90 -2.9
45,744 - -2.2
45,744 + -2.8
45,773 + -1.7
45,906 + 0.6
45,912 - -0.6
45,918 - -1.1
45,996 - -1.0
46,018 + -1.4
46,034 - -1.1
46,055 - -1.9
46,059 + -2.0
46,060 + -2.1
46,074 + -2.3
46,155 - 1.5
46,186 + 1.6
46,189 - -0.9
46,191 + -1.9
46,192 + -1.6
46,195 - -1.0
46,201 + -1.8
46,202 + -0.3
46,203 - -2.9
46,205 + -1.7
46,208 - -1.2
46,208 - -0.6
46,217 + -1.0
46,217 + -0.7
46,219 - 0.0
46,227 - -0.3
46,230 + -1.1
46,233 + -1.1
46,235 + 1.1
46,237 - -1.2
46,237 + -0.4
46,287 + -1.5
46,334 + -1.6
46,342 - -1.8
46,346 + -1.4
46,355 + -0.3
46,355 - -0.8
46,367 + -1.8
46,367 + -0.3
46,367 - 0.2
46,368 - -1.1
46,369 - -1.4
46,383 - -0.9
46,384 + -1.2
46,387 + -0.8
46,623 - -0.8
46,759 + 12743 mRNA_4375 0.13 -1.3
46,940 - 12743 mRNA_4375 0.19 -3.1
46,947 - 12743 mRNA_4375 0.20 -0.8
46,956 + 12743 mRNA_4375 0.20 -0.8
46,976 + 12743 mRNA_4375 0.21 -3.1