Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4373

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38452 to 41065 12740 mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41270 to 42990 12741 mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43132 to 46033 12742

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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40,418 + 12740 mRNA_4372 0.75 -0.7
40,539 - 12740 mRNA_4372 0.80 -1.0
40,543 - 12740 mRNA_4372 0.80 -3.0
40,856 + -0.3
40,979 + -1.3
41,037 + -0.9
41,124 - -2.6
41,125 - -0.6
41,127 + -3.4
41,129 + 0.2
41,136 - -0.7
41,137 + -2.1
41,137 + -0.1
41,138 - -0.1
41,139 - -0.4
41,139 + -3.1
41,141 - -1.7
41,152 - 0.4
41,154 + -2.2
41,156 - -2.0
41,156 - -0.5
41,157 - -2.5
41,159 + -1.1
41,163 + -0.6
41,163 + -0.7
41,163 - -2.4
41,166 - -2.0
41,166 + -1.6
41,171 + -1.0
41,200 - -0.5
41,222 + -0.7
41,233 - -1.3
41,234 - -2.1
41,254 + 0.1
41,256 - -4.0
41,264 + -0.0
41,269 + -2.7
41,355 + -0.7
41,382 + -3.5
41,382 + -1.4
41,397 + -1.8
41,430 - -2.4
41,490 + 12741 mRNA_4373 0.13 -2.3
41,512 - 12741 mRNA_4373 0.14 -2.0
41,516 - 12741 mRNA_4373 0.14 -0.2
41,783 + 12741 mRNA_4373 0.30 -1.5
41,851 - 12741 mRNA_4373 0.34 -1.5
41,864 + 12741 mRNA_4373 0.35 -0.7
41,870 + 12741 mRNA_4373 0.35 -2.9
41,937 + 12741 mRNA_4373 0.39 -0.6
42,116 + 12741 mRNA_4373 0.49 -0.1
42,232 + 12741 mRNA_4373 0.56 -0.2
42,540 + 12741 mRNA_4373 0.74 -3.0
42,735 + 12741 mRNA_4373 0.85 -0.8
42,790 + 12741 mRNA_4373 0.88 -3.7
42,864 + -1.6
42,973 + -2.5
43,033 + -1.4
43,033 + -1.9
43,160 + -0.3
43,162 - -2.0
43,311 + -3.7
43,322 - -3.1
43,373 - 0.3
43,382 + -2.3
43,425 + 12742 mRNA_4374 0.10 -1.0
43,437 + 12742 mRNA_4374 0.11 -2.1
43,541 - 12742 mRNA_4374 0.14 -0.6
43,542 - 12742 mRNA_4374 0.14 -1.2
43,720 + 12742 mRNA_4374 0.20 -0.5
43,871 + 12742 mRNA_4374 0.25 -3.2
43,896 - 12742 mRNA_4374 0.26 0.2
43,905 - 12742 mRNA_4374 0.27 -1.2
43,943 - 12742 mRNA_4374 0.28 -1.2