Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4369

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4369: 12737 - K03671 trxA thioredoxin 1, at 29253 to 29815 12737 mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30221 to 32027 12738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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28,357 - -3.4
28,362 + -3.4
28,481 + -2.3
28,533 + -2.7
28,680 + -0.5
28,784 - -1.0
28,862 - 0.5
28,867 + -0.4
28,867 + -0.2
28,870 - -1.1
28,878 - 0.9
29,035 - -1.0
29,094 + -0.7
29,103 + -2.9
29,218 - -2.8
29,668 - 12737 mRNA_4369 0.74 -3.2
29,839 + -0.9
30,499 - 12738 mRNA_4370 0.15 -1.1
30,508 - 12738 mRNA_4370 0.16 1.6