Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4339

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4338: 12706 - SUPERFAMILY--SSF53098, at 1942344 to 1943662 12706 mRNA_4339: 12707 - K17677 IRC3 ATP-dependent helicase IRC3, at 1943840 to 1947247 12707 mRNA_4340: 12708 - K01074 PPT palmitoyl-protein thioesterase, at 1947671 to 1949110 12708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,943,017 - 12706 mRNA_4338 0.51 -1.3
1,943,141 + 12706 mRNA_4338 0.60 -1.0
1,943,333 - 12706 mRNA_4338 0.75 -0.3
1,943,334 + 12706 mRNA_4338 0.75 -1.1
1,943,660 - -1.9
1,943,697 + -1.5
1,944,215 + 12707 mRNA_4339 0.11 -2.1
1,944,409 + 12707 mRNA_4339 0.17 -1.6
1,944,416 - 12707 mRNA_4339 0.17 -0.5
1,944,536 + 12707 mRNA_4339 0.20 -1.9
1,944,681 + 12707 mRNA_4339 0.25 -3.1
1,944,697 - 12707 mRNA_4339 0.25 -1.7
1,944,993 - 12707 mRNA_4339 0.34 -3.6
1,945,000 - 12707 mRNA_4339 0.34 -1.1
1,945,265 + 12707 mRNA_4339 0.42 -2.5
1,945,747 - 12707 mRNA_4339 0.56 0.5
1,945,884 - 12707 mRNA_4339 0.60 -3.4
1,945,989 - 12707 mRNA_4339 0.63 -1.9
1,946,126 - 12707 mRNA_4339 0.67 -1.5
1,946,439 + 12707 mRNA_4339 0.76 -2.3
1,946,440 - 12707 mRNA_4339 0.76 -1.3
1,946,538 - 12707 mRNA_4339 0.79 -0.1
1,946,683 + 12707 mRNA_4339 0.83 -0.4
1,946,693 + 12707 mRNA_4339 0.84 -2.1
1,946,714 + 12707 mRNA_4339 0.84 -2.9
1,946,855 + 12707 mRNA_4339 0.88 -1.9
1,947,131 - -0.7
1,947,154 - -0.5
1,947,162 - -0.2
1,947,282 - -0.3
1,947,294 + -0.7
1,947,303 - -1.5
1,947,303 + -0.8
1,947,304 + -2.4
1,947,312 - -0.9
1,947,449 - -0.6
1,947,594 + -3.1
1,947,598 - -1.3
1,947,628 + 0.1
1,947,708 + -3.5
1,947,887 + 12708 mRNA_4340 0.15 0.3
1,948,003 - 12708 mRNA_4340 0.23 -2.6
1,948,026 + 12708 mRNA_4340 0.25 -1.7