Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4338

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4337: 12705 - HMMPfam-Secretory lipase-PF03583,SUPERFAMILY--SSF53474, at 1940222 to 1941811 12705 mRNA_4338: 12706 - SUPERFAMILY--SSF53098, at 1942344 to 1943662 12706 mRNA_4339: 12707 - K17677 IRC3 ATP-dependent helicase IRC3, at 1943840 to 1947247 12707

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,941,425 + 12705 mRNA_4337 0.76 -1.7
1,941,526 + 12705 mRNA_4337 0.82 -1.4
1,941,555 + 12705 mRNA_4337 0.84 -2.5
1,942,158 + -2.6
1,942,162 + -0.3
1,942,168 + 0.0
1,942,172 + -2.0
1,942,309 + -1.0
1,942,418 + 0.8
1,942,447 - -3.1
1,942,453 + -3.3
1,942,723 - 12706 mRNA_4338 0.29 -3.2
1,943,017 - 12706 mRNA_4338 0.51 -1.3
1,943,141 + 12706 mRNA_4338 0.60 -1.0
1,943,333 - 12706 mRNA_4338 0.75 -0.3
1,943,334 + 12706 mRNA_4338 0.75 -1.1
1,943,660 - -1.9
1,943,697 + -1.5
1,944,215 + 12707 mRNA_4339 0.11 -2.1
1,944,409 + 12707 mRNA_4339 0.17 -1.6
1,944,416 - 12707 mRNA_4339 0.17 -0.5
1,944,536 + 12707 mRNA_4339 0.20 -1.9