Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4243

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4242: 12610 - K02985 RP-S3e, RPS3 small subunit ribosomal protein S3e, at 1696957 to 1698115 12610 mRNA_4243: 12611 - HMMPfam-F-box-like-PF12937, at 1698723 to 1700079 12611 mRNA_4244: 12612 - Hypothetical Protein, at 1700194 to 1701109 12612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,698,641 - -1.5
1,698,648 - -0.8
1,698,658 + -2.8
1,698,661 - -1.1
1,698,696 - -2.2
1,698,829 + -2.1
1,698,989 + 12611 mRNA_4243 0.20 0.1
1,699,257 + 12611 mRNA_4243 0.39 -2.0
1,699,285 - 12611 mRNA_4243 0.41 -1.2
1,699,440 - 12611 mRNA_4243 0.53 -1.4
1,699,551 - 12611 mRNA_4243 0.61 -1.9
1,700,114 + -1.6
1,700,131 + -0.5
1,700,154 + -1.4
1,700,407 + 12612 mRNA_4244 0.23 1.5
1,700,527 - 12612 mRNA_4244 0.36 -1.8
1,700,549 - 12612 mRNA_4244 0.39 -0.9
1,700,565 + 12612 mRNA_4244 0.41 -2.9
1,700,588 - 12612 mRNA_4244 0.43 1.0
1,700,733 + 12612 mRNA_4244 0.59 -2.5
1,700,860 + 12612 mRNA_4244 0.73 1.1