Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4227

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1655813 to 1659134 12594 mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1659342 to 1664294 12595 mRNA_4228: 12596 - K00995 pgsA, PGS1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1664349 to 1666570 12596

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,658,412 + 12594 mRNA_4226 0.78 -1.5
1,658,482 + 12594 mRNA_4226 0.80 -1.1
1,658,507 - 12594 mRNA_4226 0.81 -0.9
1,658,511 + 12594 mRNA_4226 0.81 -0.6
1,658,523 + 12594 mRNA_4226 0.82 -0.6
1,658,574 + 12594 mRNA_4226 0.83 0.9
1,658,661 - 12594 mRNA_4226 0.86 -4.4
1,658,668 + 12594 mRNA_4226 0.86 -0.8
1,658,835 - -1.9
1,658,843 - -0.5
1,658,856 - -3.3
1,658,959 - -2.3
1,658,979 - -1.0
1,658,982 + -4.2
1,659,044 + -1.1
1,659,118 + -1.0
1,659,158 + -0.3
1,659,158 + -1.9
1,659,275 + -1.5
1,659,478 + 1.4
1,659,901 + 12595 mRNA_4227 0.11 -1.2
1,660,271 + 12595 mRNA_4227 0.19 -1.0
1,660,294 - 12595 mRNA_4227 0.19 -0.7
1,660,650 + 12595 mRNA_4227 0.26 0.9
1,660,764 - 12595 mRNA_4227 0.29 -2.6
1,660,939 - 12595 mRNA_4227 0.32 -0.6
1,660,942 + 12595 mRNA_4227 0.32 -3.3
1,661,345 - 12595 mRNA_4227 0.40 -0.7
1,661,516 + 12595 mRNA_4227 0.44 0.4
1,661,519 - 12595 mRNA_4227 0.44 -0.1
1,661,626 + 12595 mRNA_4227 0.46 -2.6
1,661,762 - 12595 mRNA_4227 0.49 -0.8
1,661,768 - 12595 mRNA_4227 0.49 -1.4
1,661,946 + 12595 mRNA_4227 0.53 -1.3
1,661,982 + 12595 mRNA_4227 0.53 -0.5
1,662,053 + 12595 mRNA_4227 0.55 -2.1
1,662,066 - 12595 mRNA_4227 0.55 -2.3
1,662,088 - 12595 mRNA_4227 0.55 -0.8
1,662,090 + 12595 mRNA_4227 0.55 -2.3
1,662,103 + 12595 mRNA_4227 0.56 -0.1
1,662,170 - 12595 mRNA_4227 0.57 -0.6
1,662,177 - 12595 mRNA_4227 0.57 0.9
1,662,183 + 12595 mRNA_4227 0.57 -1.8
1,662,186 - 12595 mRNA_4227 0.57 -1.8
1,662,366 - 12595 mRNA_4227 0.61 -1.7
1,662,379 + 12595 mRNA_4227 0.61 -1.7
1,662,388 + 12595 mRNA_4227 0.61 -2.0
1,662,526 + 12595 mRNA_4227 0.64 -1.1
1,662,527 - 12595 mRNA_4227 0.64 -1.6
1,662,531 + 12595 mRNA_4227 0.64 -3.8
1,662,532 - 12595 mRNA_4227 0.64 -0.9
1,662,534 + 12595 mRNA_4227 0.64 -0.2
1,662,537 + 12595 mRNA_4227 0.65 -1.5
1,662,688 + 12595 mRNA_4227 0.68 -0.2
1,662,837 + 12595 mRNA_4227 0.71 -1.9
1,662,841 - 12595 mRNA_4227 0.71 -0.9
1,662,845 + 12595 mRNA_4227 0.71 -0.5
1,662,846 - 12595 mRNA_4227 0.71 -1.2
1,663,272 + 12595 mRNA_4227 0.79 -4.3
1,663,540 - 12595 mRNA_4227 0.85 1.7
1,663,607 - 12595 mRNA_4227 0.86 -0.9
1,663,698 + 12595 mRNA_4227 0.88 -3.0
1,663,988 - -2.7
1,664,095 - -2.7
1,664,115 - -0.2
1,664,159 + -1.4
1,664,201 - -0.9
1,664,275 - -3.9
1,664,297 + -0.7
1,664,380 + -0.1
1,664,397 - -1.5
1,664,439 + -0.2