Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4213

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4212: 12580 - KOG1968 Replication factor C, subunit RFC1 (large subunit), at 1623456 to 1625668 12580 mRNA_4213: 12581 - K01673 cynT, can carbonic anhydrase, at 1625802 to 1627146 12581 mRNA_4214: 12582 - Hypothetical Protein, at 1627604 to 1628234 12582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,624,977 - 12580 mRNA_4212 0.69 -2.2
1,624,997 + 12580 mRNA_4212 0.70 -2.7
1,625,152 + 12580 mRNA_4212 0.77 -1.5
1,625,153 - 12580 mRNA_4212 0.77 -1.1
1,625,154 - 12580 mRNA_4212 0.77 -2.1
1,625,154 - 12580 mRNA_4212 0.77 -1.4
1,625,154 - 12580 mRNA_4212 0.77 -0.0
1,625,268 - 12580 mRNA_4212 0.82 -0.2
1,625,295 - 12580 mRNA_4212 0.83 0.1
1,625,421 - 12580 mRNA_4212 0.89 -2.6
1,625,571 - -1.4
1,625,581 - -2.5
1,625,591 + 1.2
1,625,597 + -0.3
1,625,597 + -0.3
1,626,152 - 12581 mRNA_4213 0.26 -2.6
1,627,163 - -1.2
1,627,164 - -1.4
1,627,237 + -3.2
1,627,269 + 0.1
1,627,276 + -1.8
1,627,346 - -1.8
1,627,377 + -1.0
1,627,403 + -0.9
1,627,405 - -2.7
1,627,410 - -0.9
1,627,410 - -1.6
1,627,418 + 0.4
1,627,431 - -3.0
1,627,433 + -1.5
1,627,435 + -1.1
1,627,437 + 0.3
1,627,437 + -3.4
1,627,593 - -3.8
1,627,659 - 0.5
1,627,735 + 12582 mRNA_4214 0.21 -2.9
1,627,740 + 12582 mRNA_4214 0.22 0.0
1,627,742 - 12582 mRNA_4214 0.22 -2.5