Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4141

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4140: 12508 - HMMPfam-Mitochondrial genome maintenance MGM101-PF06420, at 1451089 to 1452303 12508 mRNA_4141: 12509 - Hypothetical Protein, at 1452716 to 1454075 12509 mRNA_4142: 12510 - Hypothetical Protein, at 1454343 to 1455986 12510

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,452,447 - -0.9
1,452,453 - -3.0
1,452,454 - 0.9
1,452,456 + -1.9
1,452,457 - -1.1
1,452,457 - -1.5
1,452,471 + -2.4
1,452,476 - 0.3
1,452,483 + -1.9
1,452,483 - -1.2
1,452,492 + -0.8
1,452,496 - -1.3
1,452,500 + -0.4
1,452,520 - -3.2
1,452,613 - -0.8
1,452,631 - -1.3
1,452,641 + 0.2
1,452,645 - -1.1
1,452,653 + -1.9
1,452,657 - 0.6
1,452,797 + -0.7
1,452,799 - -2.2
1,452,806 + -0.7
1,452,817 + -2.7
1,452,820 + -1.2
1,452,948 - 12509 mRNA_4141 0.17 -0.9
1,452,965 - 12509 mRNA_4141 0.18 0.1
1,452,974 + 12509 mRNA_4141 0.19 -1.0
1,452,975 - 12509 mRNA_4141 0.19 0.0
1,452,980 - 12509 mRNA_4141 0.19 -0.9
1,452,987 + 12509 mRNA_4141 0.20 -3.3
1,452,991 - 12509 mRNA_4141 0.20 -1.2
1,453,099 - 12509 mRNA_4141 0.28 -2.7
1,453,817 - 12509 mRNA_4141 0.81 -0.3
1,454,097 - -1.7
1,454,161 - -0.9
1,454,163 - -3.3
1,454,184 - 0.0
1,454,302 + 0.9
1,454,347 + -0.1
1,454,356 + -2.2
1,454,361 + -1.6
1,454,467 + -1.8
1,454,481 - -1.8
1,454,595 - 12510 mRNA_4142 0.15 -1.5
1,454,613 + 12510 mRNA_4142 0.16 -0.9
1,454,626 + 12510 mRNA_4142 0.17 -0.4
1,454,634 + 12510 mRNA_4142 0.18 0.7
1,454,746 + 12510 mRNA_4142 0.25 1.4
1,454,764 - 12510 mRNA_4142 0.26 -1.1
1,454,917 - 12510 mRNA_4142 0.35 -2.6
1,455,042 - 12510 mRNA_4142 0.43 -0.4
1,455,057 + 12510 mRNA_4142 0.43 -0.8
1,455,066 - 12510 mRNA_4142 0.44 -3.0
1,455,071 + 12510 mRNA_4142 0.44 -4.5
1,455,075 + 12510 mRNA_4142 0.45 -1.3