Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4125

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4124: 12492 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 1405556 to 1407296 12492 mRNA_4125: 12493 - KOG0627 Heat shock transcription factor, at 1407768 to 1409382 12493 mRNA_4126: 12494 - K20408 WDR24 WD repeat-containing protein 24, at 1410294 to 1414666 12494

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,406,804 - 12492 mRNA_4124 0.72 -1.5
1,406,882 - 12492 mRNA_4124 0.76 -0.9
1,407,032 - 12492 mRNA_4124 0.85 -0.8
1,407,151 - -0.5
1,407,180 - -2.0
1,407,308 - -1.8
1,407,454 + -0.6
1,407,456 - -0.4
1,407,467 - -1.2
1,407,474 - 0.4
1,407,474 - -2.3
1,407,475 + -0.1
1,407,475 + -0.6
1,407,477 + 0.3
1,407,477 - -2.9
1,407,479 - -2.5
1,407,490 - -0.4
1,407,490 + -1.3
1,407,492 - -1.6
1,407,493 + -1.4
1,407,495 - -2.7
1,407,504 + -3.7
1,407,512 + -0.2
1,407,530 + -1.9
1,407,532 + -2.7
1,407,681 + -1.3
1,407,817 + 0.1
1,407,950 - 12493 mRNA_4125 0.11 -0.5
1,408,102 + 12493 mRNA_4125 0.21 -3.8
1,408,200 + 12493 mRNA_4125 0.27 -1.9
1,408,251 + 12493 mRNA_4125 0.30 -0.8
1,408,258 - 12493 mRNA_4125 0.30 -4.0
1,408,401 + 12493 mRNA_4125 0.39 0.0
1,408,681 - 12493 mRNA_4125 0.57 -3.6
1,408,720 - 12493 mRNA_4125 0.59 -0.2
1,408,729 + 12493 mRNA_4125 0.60 -0.3
1,408,814 - 12493 mRNA_4125 0.65 -3.3
1,408,839 - 12493 mRNA_4125 0.66 1.0
1,408,982 - 12493 mRNA_4125 0.75 -0.7
1,409,006 - 12493 mRNA_4125 0.77 0.5
1,409,016 + 12493 mRNA_4125 0.77 -0.6
1,409,023 + 12493 mRNA_4125 0.78 -2.6
1,409,028 - 12493 mRNA_4125 0.78 0.5
1,409,038 - 12493 mRNA_4125 0.79 -0.7
1,409,071 - 12493 mRNA_4125 0.81 -0.6
1,409,127 - 12493 mRNA_4125 0.84 -0.3
1,409,134 + 12493 mRNA_4125 0.85 -2.2
1,409,183 - 12493 mRNA_4125 0.88 -1.6
1,409,208 + 12493 mRNA_4125 0.89 -1.8
1,409,276 + -4.5
1,409,289 - -1.8
1,409,341 - -0.4
1,409,351 + -3.3
1,409,361 - -1.3
1,409,435 - -1.2
1,409,437 - -1.6
1,409,438 + -0.2
1,409,439 - -3.2
1,409,445 + -0.8
1,409,447 + 0.9
1,409,460 + -2.6
1,409,463 - 1.4
1,409,463 + -3.7
1,409,463 + -1.8
1,409,466 + -0.8
1,409,467 - -1.8
1,409,468 - -2.3
1,409,469 - 0.2
1,409,469 - -1.1
1,409,470 - -3.0
1,409,472 + -3.5
1,409,473 + -2.0
1,409,474 - -0.9
1,409,475 + -0.2
1,409,475 + -1.3
1,409,475 + -1.3
1,409,476 + -2.0
1,409,477 + -1.2
1,409,481 + -1.8
1,409,485 + -1.8
1,409,488 + -0.3
1,409,514 + -2.3
1,409,520 - -1.3
1,409,521 + -1.0
1,409,583 - -2.0
1,409,595 + -3.9
1,409,601 - -2.5
1,409,614 + -2.3
1,409,614 + -1.0
1,409,617 + -0.8
1,409,618 - 1.1
1,409,619 - -1.2
1,409,620 - -1.7
1,409,624 - -2.0
1,409,625 - 0.5
1,409,627 - 0.1
1,409,627 + -1.7
1,409,628 + 0.2
1,409,634 + -1.6
1,409,647 + -1.3
1,409,654 - -1.9
1,409,676 + -1.6
1,409,711 - -2.1
1,409,714 - -2.4
1,409,733 - 0.1
1,409,749 - -1.8
1,409,760 - -1.5
1,409,760 + -0.5
1,409,763 - -1.8
1,409,764 - -3.8
1,409,778 - -1.7
1,409,781 + -0.6
1,409,785 + -0.6
1,409,798 - -0.3
1,409,798 - -2.2
1,409,798 - -0.2
1,409,798 - 0.1
1,409,800 + -0.7
1,409,801 + -3.5
1,409,831 - -1.9
1,409,897 - -1.0
1,409,907 + -1.0
1,409,908 - -3.3
1,409,927 - -1.0
1,409,928 + -0.6
1,409,929 + -0.9
1,409,932 - -0.8
1,409,934 - -2.8
1,409,940 - -0.0
1,409,963 - -0.7
1,409,965 + -0.5
1,409,974 - -0.5
1,409,998 + -0.7
1,410,029 - 0.6
1,410,044 + -2.1
1,410,044 + 0.4
1,410,045 - -3.9
1,410,047 + -1.4
1,410,050 + -0.2
1,410,064 - -0.4
1,410,070 + -0.4
1,410,077 - -0.1
1,410,090 - 0.5
1,410,092 + -1.4
1,410,096 + -2.0
1,410,118 + -1.8
1,410,123 - -1.9
1,410,142 - -1.3
1,410,151 + -1.4
1,410,155 + -2.0
1,410,197 - -2.7
1,410,203 + -1.2
1,410,218 - -1.0
1,410,223 - -0.1
1,410,236 + -2.0
1,410,237 - -0.9
1,410,248 + -0.1
1,410,256 - -0.5
1,410,257 + -1.5
1,410,258 - -2.6
1,410,364 - -1.7
1,410,365 + -0.5
1,410,369 - 1.0