Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4116

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4115: 12483 - BLAST Nuclear receptor corepressor 2 [Rhizoctonia solani], at 1383880 to 1387227 12483 mRNA_4116: 12484 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1387414 to 1388698 12484 mRNA_4117: 12485 - K15728 LPIN phosphatidate phosphatase LPIN, at 1388981 to 1392980 12485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,386,504 + 12483 mRNA_4115 0.78 -0.6
1,386,585 + 12483 mRNA_4115 0.81 2.2
1,386,633 - 12483 mRNA_4115 0.82 0.4
1,386,761 - 12483 mRNA_4115 0.86 -0.6
1,386,789 + 12483 mRNA_4115 0.87 -3.6
1,387,051 - 0.9
1,387,072 + -2.3
1,387,229 + -2.0
1,387,235 - -2.1
1,387,285 - -1.4
1,387,319 - -1.2
1,387,336 - -1.9
1,387,339 + -0.5
1,387,340 + -1.7
1,387,353 + -1.8
1,387,366 - -1.4
1,387,376 + -1.1
1,387,378 - -0.2
1,387,393 - -1.4
1,387,402 + 0.2
1,387,538 + -1.5
1,387,802 + 12484 mRNA_4116 0.30 -2.9
1,387,817 - 12484 mRNA_4116 0.31 -2.8
1,387,818 - 12484 mRNA_4116 0.31 -3.2
1,387,962 - 12484 mRNA_4116 0.43 -2.1
1,388,376 + 12484 mRNA_4116 0.75 -0.4
1,388,391 + 12484 mRNA_4116 0.76 -2.3
1,388,658 - -1.5
1,388,678 - -0.1
1,388,796 - -0.9
1,388,816 + -2.3
1,388,822 - -1.8