Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4112

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4111: 12479 - K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51, at 1376562 to 1377671 12479 mRNA_4112: 12480 - HMMPfam-Mannosyltransferase putative-PF11051,SUPERFAMILY--SSF53448, at 1378043 to 1379698 12480 mRNA_4113: 12481 - K02993 RP-S7e, RPS7 small subunit ribosomal protein S7e, at 1380385 to 1381859 12481

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,377,057 - 12479 mRNA_4111 0.45 -1.3
1,377,228 - 12479 mRNA_4111 0.60 -3.8
1,377,528 + 12479 mRNA_4111 0.87 -0.3
1,377,679 + -1.7
1,377,799 + -2.2
1,377,814 - -1.2
1,377,816 + 0.7
1,377,816 + -1.2
1,377,817 + -1.9
1,377,822 - -2.0
1,377,825 + 0.3
1,377,834 - -3.0
1,377,839 + -0.6
1,377,843 - -0.7
1,377,859 + -1.3
1,377,981 - -0.1
1,377,994 + -2.3
1,378,023 + -4.0
1,378,118 + -0.1
1,378,288 + 12480 mRNA_4112 0.15 -0.4
1,378,288 + 12480 mRNA_4112 0.15 0.1
1,378,310 - 12480 mRNA_4112 0.16 -0.4
1,378,447 + 12480 mRNA_4112 0.24 -1.4
1,378,544 - 12480 mRNA_4112 0.30 -2.1
1,378,581 - 12480 mRNA_4112 0.32 0.9
1,378,598 + 12480 mRNA_4112 0.34 -1.9
1,378,601 + 12480 mRNA_4112 0.34 -2.0
1,378,717 - 12480 mRNA_4112 0.41 -2.4
1,378,912 + 12480 mRNA_4112 0.52 -4.1
1,379,194 + 12480 mRNA_4112 0.70 -1.5
1,379,579 - -1.8
1,379,588 + -1.8
1,379,750 - -0.7
1,379,872 - -1.9
1,379,881 + -1.7
1,379,886 - 0.6
1,380,046 + -0.9
1,380,174 - -1.2
1,380,183 + -1.7
1,380,307 - -0.9
1,380,326 - -0.7
1,380,327 + -1.1
1,380,343 - -3.1
1,380,347 - 0.2