Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4106

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4105: 12473 - K15306 RANBP1 Ran-binding protein 1, at 1368421 to 1369571 12473 mRNA_4106: 12474 - HMMPfam-L-lysine 6-monooxygenase (NADPH-requiring)-PF13434,SUPERFAMILY--SSF51905, at 1370124 to 1372356 12474 mRNA_4107: 12475 - K00621 GNPNAT1, GNA1 glucosamine-phosphate N-acetyltransferase, at 1372568 to 1373212 12475 mRNA_4108: 12476 - HMMPfam-Aminotransferase class IV-PF01063,SUPERFAMILY--SSF56752, at 1373354 to 1374334 12476

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,369,578 + -1.4
1,369,736 - -1.2
1,369,737 - 0.4
1,369,755 + 1.4
1,369,884 - 0.0
1,369,908 + -0.7
1,369,976 + -1.1
1,369,978 + -0.4
1,370,004 + 0.7
1,370,021 - 0.0
1,370,047 + -0.7
1,370,057 - -1.3
1,370,069 - 0.1
1,370,105 + -0.2
1,370,115 + -1.6
1,370,128 - 0.2
1,370,185 + -1.0
1,370,239 + 1.6
1,370,306 + -1.6
1,370,331 + -3.7
1,370,626 + 12474 mRNA_4106 0.22 -1.3
1,370,653 - 12474 mRNA_4106 0.24 -2.3
1,370,772 - 12474 mRNA_4106 0.29 -3.1
1,370,892 + 12474 mRNA_4106 0.34 0.1
1,371,304 - 12474 mRNA_4106 0.53 -0.0
1,371,596 - 12474 mRNA_4106 0.66 -2.7
1,371,770 - 12474 mRNA_4106 0.74 -0.9
1,372,093 + 12474 mRNA_4106 0.88 0.4
1,372,315 - -0.7
1,372,349 - 0.7
1,372,499 - -0.4