Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4082

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4082: 12450 - KOG2194 Aminopeptidases of the M20 family, at 1315930 to 1319483 12450 mRNA_4083: 12451 - K03593 mrp, NUBPL ATP-binding protein involved in chromosome partitioning, at 1319872 to 1321104 12451

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,315,567 + -1.0
1,315,705 + -0.4
1,315,707 - 0.4
1,315,708 + -4.0
1,315,710 + -2.2
1,315,876 - 1.6
1,315,889 + -3.2
1,316,004 - -3.3
1,316,019 - -0.5
1,316,164 - -2.2
1,316,172 - -2.4
1,316,591 - 12450 mRNA_4082 0.19 0.5
1,316,729 - 12450 mRNA_4082 0.22 -1.1
1,317,093 + 12450 mRNA_4082 0.33 -1.4
1,317,335 - 12450 mRNA_4082 0.40 -2.1
1,317,338 + 12450 mRNA_4082 0.40 1.6
1,317,338 - 12450 mRNA_4082 0.40 1.7
1,317,340 + 12450 mRNA_4082 0.40 -0.9
1,317,504 + 12450 mRNA_4082 0.44 -2.2
1,317,614 + 12450 mRNA_4082 0.47 0.1
1,317,748 - 12450 mRNA_4082 0.51 -2.1
1,317,940 - 12450 mRNA_4082 0.57 -1.9
1,317,957 - 12450 mRNA_4082 0.57 -1.8
1,318,712 + 12450 mRNA_4082 0.78 -1.2
1,318,827 - 12450 mRNA_4082 0.82 -3.7
1,319,117 - 12450 mRNA_4082 0.90 -2.1
1,319,137 - -0.3
1,319,432 + -0.6
1,319,437 - -1.8
1,319,570 - -2.2
1,319,571 - -2.7
1,319,571 + -3.0
1,319,573 + 0.3
1,319,581 - -0.4
1,319,582 - -2.3
1,319,583 + 0.3
1,319,589 - -0.0
1,320,239 - 12451 mRNA_4083 0.30 -0.1