Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4061

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4060: 12428 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 1257194 to 1260711 12428 mRNA_4061: 12429 - SUPERFAMILY--SSF52540, at 1260882 to 1262989 12429 mRNA_4062: 12430 - HMMPfam-Protein of unknown function (DUF1115)-PF06544, at 1263570 to 1264744 12430

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,260,477 - -1.7
1,260,643 + -1.4
1,260,801 - -0.2
1,260,805 - -1.3
1,260,937 + -1.3
1,260,982 + -1.8
1,261,091 + -1.7
1,261,104 - 12429 mRNA_4061 0.11 -1.6
1,261,245 - 12429 mRNA_4061 0.17 -1.4
1,261,416 + 12429 mRNA_4061 0.25 -3.7
1,261,504 + 12429 mRNA_4061 0.30 -1.1
1,261,571 + 12429 mRNA_4061 0.33 -0.7
1,261,633 - 12429 mRNA_4061 0.36 -1.0
1,261,675 + 12429 mRNA_4061 0.38 -0.5
1,261,675 + 12429 mRNA_4061 0.38 -1.7
1,261,955 - 12429 mRNA_4061 0.51 -0.5
1,261,967 + 12429 mRNA_4061 0.51 -2.2
1,262,116 - 12429 mRNA_4061 0.59 -1.9
1,262,389 + 12429 mRNA_4061 0.71 -0.0
1,262,552 + 12429 mRNA_4061 0.79 0.5
1,262,698 - 12429 mRNA_4061 0.86 -1.8
1,262,727 - 12429 mRNA_4061 0.88 -2.7
1,263,228 - -1.4
1,263,249 - -1.7
1,263,253 - -1.5
1,263,255 + -0.6
1,263,259 + -2.0
1,263,262 - -0.8
1,263,267 + -1.8
1,263,267 + 0.3
1,263,275 + -0.8
1,263,278 + -1.0
1,263,286 - -1.5
1,263,288 + -1.8
1,263,297 + 0.1
1,263,319 - -1.0
1,263,367 - -0.9
1,263,433 - -1.7
1,263,437 - -2.2
1,263,623 - -0.7
1,263,638 - -3.0
1,263,763 + 12430 mRNA_4062 0.16 -1.8
1,263,792 + 12430 mRNA_4062 0.19 -1.5
1,263,805 + 12430 mRNA_4062 0.20 -1.8
1,263,912 - 12430 mRNA_4062 0.29 -3.7
1,263,938 + 12430 mRNA_4062 0.31 -0.1
1,263,938 + 12430 mRNA_4062 0.31 -0.2