Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4059

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4058: 12426 - HMMPfam-Transcription factor Pcc1-PF09341, at 1254805 to 1255288 12426 mRNA_4059: 12427 - Hypothetical Protein, at 1255618 to 1257004 12427 mRNA_4060: 12428 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 1257194 to 1260711 12428

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,254,629 + -0.2
1,254,640 + -0.7
1,254,642 + -1.7
1,254,740 + -1.6
1,254,740 + -2.7
1,254,741 + -0.4
1,254,742 - -1.6
1,254,769 + -0.7
1,254,775 + 0.9
1,255,331 - -2.6
1,255,399 + 1.0
1,255,486 + -2.8
1,255,499 + -2.7
1,256,327 + 12427 mRNA_4059 0.51 -1.5
1,256,384 - 12427 mRNA_4059 0.55 -0.7
1,256,555 - 12427 mRNA_4059 0.68 0.6
1,256,666 + 12427 mRNA_4059 0.76 -2.0
1,256,671 - 12427 mRNA_4059 0.76 -1.1
1,256,679 - 12427 mRNA_4059 0.76 -1.1
1,256,994 + 0.1
1,257,162 + 0.5
1,257,280 + -3.0
1,257,726 - 12428 mRNA_4060 0.15 -0.4
1,257,730 + 12428 mRNA_4060 0.15 -1.6
1,257,996 - 12428 mRNA_4060 0.23 -2.1