Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4037

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4035: 12403 - Hypothetical Protein, at 1207830 to 1209196 12403 mRNA_4036: 12404 - Hypothetical Protein, at 1209337 to 1209939 12404 mRNA_4037: 12405 - K12232 HECTD2 E3 ubiquitin-protein ligase HECTD2, at 1210152 to 1214937 12405 mRNA_4038: 12406 - K10772 APEX2 AP endonuclease 2, at 1215030 to 1217455 12406

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,209,252 + 0.0
1,209,272 + 0.5
1,209,406 - 12404 mRNA_4036 0.11 -0.8
1,209,539 - 12404 mRNA_4036 0.33 -2.0
1,209,695 - 12404 mRNA_4036 0.59 -2.0
1,209,806 - 12404 mRNA_4036 0.78 -1.5
1,209,846 + 12404 mRNA_4036 0.84 -2.6
1,209,967 - -1.5
1,210,131 - 0.6
1,210,257 + 1.4
1,210,426 - 0.4
1,211,021 - 12405 mRNA_4037 0.18 -3.3
1,211,171 - 12405 mRNA_4037 0.21 -2.2
1,211,444 - 12405 mRNA_4037 0.27 -0.3
1,211,485 + 12405 mRNA_4037 0.28 -2.4
1,211,971 - 12405 mRNA_4037 0.38 -1.5
1,212,075 - 12405 mRNA_4037 0.40 2.0
1,212,522 + 12405 mRNA_4037 0.50 -0.5
1,212,811 - 12405 mRNA_4037 0.56 -2.9
1,212,941 + 12405 mRNA_4037 0.58 -1.8
1,213,399 - 12405 mRNA_4037 0.68 -1.0
1,213,514 + 12405 mRNA_4037 0.70 -0.7
1,213,715 + 12405 mRNA_4037 0.74 -2.1
1,213,823 - 12405 mRNA_4037 0.77 -0.9
1,213,974 - 12405 mRNA_4037 0.80 -0.1
1,214,258 - 12405 mRNA_4037 0.86 -1.0
1,214,400 - 12405 mRNA_4037 0.89 -1.4
1,214,550 + -1.5
1,214,977 + -0.1
1,214,990 - -1.3
1,215,008 + -0.3
1,215,294 - 12406 mRNA_4038 0.11 0.7
1,215,302 + 12406 mRNA_4038 0.11 -2.0
1,215,327 + 12406 mRNA_4038 0.12 1.2
1,215,589 + 12406 mRNA_4038 0.23 -1.6